; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0005421 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005421
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr09:13251278..13252594
RNA-Seq ExpressionIVF0005421
SyntenyIVF0005421
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.60e-17766.02Show/hide
Query:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
        MIFC A+EPS+ F+RE LQKFGEL GL+AN  K SIFVAG  NE AS LA  MGF+ GNL VRYL LPLL GRLR +D APLIQRITSRIRSW ARVLSF
Subjt:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF

Query:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIK----------------VAWVDV--------------LGKSWCLRAILR
        AGR QLV SV RS QVYWASVFVLP+ VHN+VDKILRSYLWR ++     I                 VAWV+               + +SWCLRAILR
Subjt:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIK----------------VAWVDV--------------LGKSWCLRAILR

Query:  KREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGG
        KR+ LK+ V ++VG+G+S RVWLDPWL    ILEQVGERV+YDAASRR+ARLS+FI PDGEW WPRVS+ELIDLW+RVQ V PCLSV D WVWVPG +GG
Subjt:  KREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGG

Query:  FSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLFFSCSFGGGGDVWSRVLRIMGSSHRI
        FSIASA + +RPRGGRV W GLLWGGGN+ KH FCAWL IK++LGT DRLHRWDSS             SRDHLFFSC FG   DVWSRVL++M SSHRI
Subjt:  FSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLFFSCSFGGGGDVWSRVLRIMGSSHRI

Query:  GHWRVELSWICH
         +W VELSWICH
Subjt:  GHWRVELSWICH

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]3.77e-18166.82Show/hide
Query:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGR-LRSNDYAPLIQRITSRIRSWTARVLS
        MIFCAA+E SI FIRECLQKFGE SGLFANPRKSSIFV GVNNE ASHLA C+G      S   L  P  +   LRS D APLIQRITSRIRSWTARVLS
Subjt:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGR-LRSNDYAPLIQRITSRIRSWTARVLS

Query:  FAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV-----------------------------------------
        FAGRLQLV SVLRS QVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV                                         
Subjt:  FAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV-----------------------------------------

Query:  -------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLW
                     +G+SWCLRAILRKREK+KH                            VGERV+YDAASRR+A+LSDFIDP+GEWLWPRVSLELIDLW
Subjt:  -------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLW

Query:  ERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLF
        ERVQEVSPCLSVSDSWVWVPGR+GGFSIASAWEA+ PRGGRVLWDGLLWGGGNI KH FCAWLAIKDRL T DRLHRWDSS             SRDHLF
Subjt:  ERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLF

Query:  FSCSFGGGGDVWSRVLRIMGSSHRIGHWRVELSWICH
        FSC FGG  DVWSRV +IM SSHRIGHW VELSWICH
Subjt:  FSCSFGGGGDVWSRVLRIMGSSHRIGHWRVELSWICH

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]7.22e-17069.17Show/hide
Query:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
        MIFCAA+EPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLA CMGFVRGNL +RYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
Subjt:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF

Query:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV------------------------------------------
        AGRLQLV  VLRS QVYWASVFVLPAYVH+EVDKIL SYLWRGKEEGRGGIKVAWVDV                                          
Subjt:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV------------------------------------------

Query:  ---------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELID
                       +G+SW LRAILRKREKLKHLV MKVGN NS RVWLD WL   AILEQVGERVMYDAAS R+ARLSDFIDPDGEWLWPR       
Subjt:  ---------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELID

Query:  LWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHR-WDSSSR
                                 GGFSIASAWEAVRPRGG+VLWDGLLWGGGNI K+ FCAWLAIKDRLGT DRLHR W+S  R
Subjt:  LWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHR-WDSSSR

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]2.44e-22784.86Show/hide
Query:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
        MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
Subjt:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF

Query:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV------------------------------------------
        AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV                                          
Subjt:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV------------------------------------------

Query:  ---------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELID
                       +GKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELID
Subjt:  ---------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELID

Query:  LWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS
        LWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS
Subjt:  LWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]9.74e-17870.51Show/hide
Query:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
        MIFCAA+EPSIRFIRECLQKFGELSGLFANPRKS IFVAGVNNENAS LA CMGFVRGNL VRYLGLPLL GRLRSND AP+IQRITSRIRSW ARVLSF
Subjt:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF

Query:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGR---------------GGIKVAWVDV--------------LGKSWCLRAILRK
        AGRLQLV SVLRS QVYWASVFVLPAYVHNEVDKILRSYLWR                     G + VAWV+               +G+SWCLRAILR 
Subjt:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGR---------------GGIKVAWVDV--------------LGKSWCLRAILRK

Query:  REKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGGF
                                    GAILEQVGERV+YDAASRR+ARLSDFI  +GEWLW RV LELI+LW+RVQEVSPCLSVSDSWVWVPGR+GGF
Subjt:  REKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGGF

Query:  SIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLFFSCSFGGGGDVWSRVL
        SIASAW+A+RPRGGRVLWDGLLWGG NI KH FCAWLAIKDRLGT DRLHRWDSS             SRDHLFFSC FGG  DVWS VL
Subjt:  SIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLFFSCSFGGGGDVWSRVL

TrEMBL top hitse value%identityAlignment
A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein7.5e-15065.78Show/hide
Query:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
        MIFC A+EPS+ F+RE LQKFGEL GL+AN  K SIFVAG  NE AS LA  MGF+ GNL VRYL LPLL GRLR +D APLIQRITSRIRSW ARVLSF
Subjt:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF

Query:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKE----------------EGRGGIKVAWVDV--------------LGKSWCLRAILR
        AGR QLV SV RS QVYWASVFVLP+ VHN+VDKILRSYLWR ++                     + VAWV+               + +SWCLRAILR
Subjt:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKE----------------EGRGGIKVAWVDV--------------LGKSWCLRAILR

Query:  KREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGG
        KR+ LK+ V ++VG+G+S RVWLDPWL    ILEQVGERV+YDAASRR+ARLS+FI PDGEW WPRVS+ELIDLW+RVQ V PCLSV D WVWVPG +GG
Subjt:  KREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGG

Query:  FSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLFFSCSFGGGGDVWSRVLRIMGSSHRI
        FSIASA + +RPRGGRV W GLLWGGGN+ KH FCAWL IK++LGT DRLHRWDSS             SRDHLFFSC F  G DVWSRVL++M SSHRI
Subjt:  FSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLFFSCSFGGGGDVWSRVLRIMGSSHRI

Query:  GHWRVELSWICH
         +W VELSWICH
Subjt:  GHWRVELSWICH

A0A5A7TZS0 Reverse transcriptase domain-containing protein4.7e-15266.82Show/hide
Query:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLA-GRLRSNDYAPLIQRITSRIRSWTARVLS
        MIFCAA+E SI FIRECLQKFGE SGLFANPRKSSIFV GVNNE ASHLA C+G      S   L  P  +   LRS D APLIQRITSRIRSWTARVLS
Subjt:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLA-GRLRSNDYAPLIQRITSRIRSWTARVLS

Query:  FAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV-----------------------------------------
        FAGRLQLV SVLRS QVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV                                         
Subjt:  FAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV-----------------------------------------

Query:  -------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLW
                     +G+SWCLRAILRKREK+KH                            VGERV+YDAASRR+A+LSDFIDP+GEWLWPRVSLELIDLW
Subjt:  -------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLW

Query:  ERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLF
        ERVQEVSPCLSVSDSWVWVPGR+GGFSIASAWEA+ PRGGRVLWDGLLWGGGNI KH FCAWLAIKDRL T DRLHRWDSS             SRDHLF
Subjt:  ERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLF

Query:  FSCSFGGGGDVWSRVLRIMGSSHRIGHWRVELSWICH
        FSC F  GGDVWSRV +IM SSHRIGHW VELSWICH
Subjt:  FSCSFGGGGDVWSRVLRIMGSSHRIGHWRVELSWICH

A0A5A7UV01 F17F8.51.6e-13969.17Show/hide
Query:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
        MIFCAA+EPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLA CMGFVRGNL +RYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
Subjt:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF

Query:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV------------------------------------------
        AGRLQLV  VLRS QVYWASVFVLPAYVH+EVDKIL SYLWRGKEEGRGGIKVAWVDV                                          
Subjt:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV------------------------------------------

Query:  ---------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELID
                       +G+SW LRAILRKREKLKHLV MKVGN NS RVWLD WL   AILEQVGERVMYDAAS R+ARLSDFIDPDGEWLWP        
Subjt:  ---------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELID

Query:  LWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHR-WDSSSR
                                RGGFSIASAWEAVRPRGG+VLWDGLLWGGGNI K+ FCAWLAIKDRLGT DRLHR W+S  R
Subjt:  LWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHR-WDSSSR

A0A5A7V3Z0 Reverse transcriptase domain-containing protein1.5e-18584.86Show/hide
Query:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
        MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
Subjt:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF

Query:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV------------------------------------------
        AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV                                          
Subjt:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV------------------------------------------

Query:  ---------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELID
                       +GKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELID
Subjt:  ---------------LGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELID

Query:  LWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS
        LWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS
Subjt:  LWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein8.6e-14670.51Show/hide
Query:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF
        MIFCAA+EPSIRFIRECLQKFGELSGLFANPRKS IFVAGVNNENAS LA CMGFVRGNL VRYLGLPLL GRLRSND AP+IQRITSRIRSW ARVLSF
Subjt:  MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF

Query:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEE---------------GRGGIKVAWVDV--------------LGKSWCLRAILRK
        AGRLQLV SVLRS QVYWASVFVLPAYVHNEVDKILRSYLWR                     G + VAWV+               +G+SWCLRAILR 
Subjt:  AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEE---------------GRGGIKVAWVDV--------------LGKSWCLRAILRK

Query:  REKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGGF
                                    GAILEQVGERV+YDAASRR+ARLSDFI  +GEWLW RV LELI+LW+RVQEVSPCLSVSDSWVWVPGR+GGF
Subjt:  REKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGGF

Query:  SIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLFFSCSFGGGGDVWSRVL
        SIASAW+A+RPRGGRVLWDGLLWGG NI KH FCAWLAIKDRLGT DRLHRWDSS             SRDHLFFSC F  GGDVWS VL
Subjt:  SIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSS-------------SRDHLFFSCSFGGGGDVWSRVL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.0e-1033.7Show/hide
Query:  LPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV
        +P+L  R+  + +  +++R++SR+  W  + LSFAGRL L  +VL S  V+  S  +LP  + N +D++ R++LW    E +    V W  V
Subjt:  LPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDV

Arabidopsis top hitse value%identityAlignment
AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-1829.6Show/hide
Query:  ILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRR---KARLSDFIDPDGEWLWP----RVSLELIDLWERVQEVSPCLSVSDS
        +L  R   +  V+  +GNG     W D W   G +++ +G+   Y + S R    AR+ + +  +G W  P      +  + D    +   SP  ++ DS
Subjt:  ILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRR---KARLSDFIDPDGEWLWP----RVSLELIDLWERVQEVSPCLSVSDS

Query:  WVWVPGR--RGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRW-------------DSSSRDHLFFSCSFGGGGDVWS
        + WV G     GFS A  W+A+RPR   + W   +W  G + KH F  W++  DRL T  RL  W             ++ SRDHL FSC F     VW 
Subjt:  WVWVPGR--RGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRW-------------DSSSRDHLFFSCSFGGGGDVWS

Query:  RVL-RIMGSSHRIGHWRVELSWI
            R+         W   LSW+
Subjt:  RVL-RIMGSSHRIGHWRVELSWI

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-0734.94Show/hide
Query:  SAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRW-------------DSSSRDHLFFSCSFGGGGDVW
        + W  + P G RV W   +W  G I KH F AW+ ++ RL T DR+  W                +R HLFF C F    +VW
Subjt:  SAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRW-------------DSSSRDHLFFSCSFGGGGDVW

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-3931.62Show/hide
Query:  VAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILR
        +AGV + + + +     F  G L VRYLGLPLL  ++ ++DY PL+++I  RI  WTAR LSFAGRLQL+ SV+ S   +W S F LP+    E+D I  
Subjt:  VAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILR

Query:  SYLWRGKEEGRGGIKVAWVDV--------LG---------------------KSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGE
        S+LW G E      KVAW DV        LG                      SW  + IL+ R      V+  + NG++   W D W   G +++  G 
Subjt:  SYLWRGKEEGRGGIKVAWVDV--------LG---------------------KSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGE

Query:  RVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEV------SPCLSVSDSWVWVPGR---RGGFSIASAWEAVRPRGGRVLWDGLLWGGGNI
        R   D      A +++ +      +  R      D   R+++V          S  D+  W       +  F+    W A R    +V W   +W     
Subjt:  RVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEV------SPCLSVSDSWVWVPGR---RGGFSIASAWEAVRPRGGRVLWDGLLWGGGNI

Query:  QKHFFCAWLAIKDRLGTIDRLHRW----DSS---------SRDHLFFSCSF
         K+   AW+AIK+RL T DR+  W    DSS         +RDHLFF+C +
Subjt:  QKHFFCAWLAIKDRLGTIDRLHRW----DSS---------SRDHLFFSCSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTTTGTGCTGCTAATGAGCCCTCTATCAGATTTATCCGAGAATGTCTTCAGAAGTTTGGTGAGCTTTCAGGTTTGTTCGCAAATCCTAGGAAAAGCTCTATTTT
TGTTGCAGGAGTTAATAATGAGAATGCTTCTCATCTGGCTACTTGTATGGGTTTTGTCCGTGGTAATCTCTCTGTTCGTTATCTTGGCCTTCCTCTTTTGGCGGGTCGAT
TACGTTCTAATGATTATGCTCCTCTGATTCAGCGTATCACTAGCAGGATTCGTTCTTGGACCGCTCGAGTTCTTTCGTTTGCAGGTAGACTGCAGCTTGTTCATTCTGTG
CTTCGTAGTTTTCAAGTGTACTGGGCTAGTGTGTTTGTTCTTCCTGCGTATGTGCACAATGAGGTGGACAAGATTCTCAGATCTTATCTTTGGAGGGGTAAGGAGGAAGG
TAGAGGAGGTATTAAGGTGGCTTGGGTGGATGTGTTGGGTAAATCTTGGTGTCTTCGGGCGATCTTACGTAAGCGAGAGAAGCTGAAGCATCTTGTAAGGATGAAGGTGG
GAAATGGTAATAGTTTTAGAGTTTGGCTTGATCCGTGGTTGCCGGAGGGTGCCATTTTGGAGCAGGTTGGGGAGAGAGTGATGTATGATGCAGCTAGTCGGAGGAAGGCT
AGACTCTCTGACTTTATTGACCCAGATGGAGAATGGCTTTGGCCTCGAGTTTCTTTGGAATTAATTGACCTATGGGAGAGGGTTCAGGAGGTCAGTCCGTGTCTTAGTGT
TAGTGATAGTTGGGTATGGGTTCCTGGTCGTCGGGGTGGTTTCTCTATTGCAAGTGCATGGGAAGCTGTTCGTCCTAGGGGTGGTCGGGTTCTATGGGATGGTTTATTGT
GGGGTGGGGGAAATATCCAAAAACATTTCTTCTGTGCGTGGTTGGCTATTAAAGATAGGTTGGGTACTATAGATAGATTGCATAGGTGGGATAGTTCATCTCGCGATCAC
TTATTCTTTTCGTGTTCGTTTGGGGGGGGGGGGGATGTTTGGTCTAGGGTTCTTCGGATCATGGGTTCCTCTCATAGGATTGGGCATTGGAGGGTTGAGTTGTCTTGGAT
TTGTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTTTTGTGCTGCTAATGAGCCCTCTATCAGATTTATCCGAGAATGTCTTCAGAAGTTTGGTGAGCTTTCAGGTTTGTTCGCAAATCCTAGGAAAAGCTCTATTTT
TGTTGCAGGAGTTAATAATGAGAATGCTTCTCATCTGGCTACTTGTATGGGTTTTGTCCGTGGTAATCTCTCTGTTCGTTATCTTGGCCTTCCTCTTTTGGCGGGTCGAT
TACGTTCTAATGATTATGCTCCTCTGATTCAGCGTATCACTAGCAGGATTCGTTCTTGGACCGCTCGAGTTCTTTCGTTTGCAGGTAGACTGCAGCTTGTTCATTCTGTG
CTTCGTAGTTTTCAAGTGTACTGGGCTAGTGTGTTTGTTCTTCCTGCGTATGTGCACAATGAGGTGGACAAGATTCTCAGATCTTATCTTTGGAGGGGTAAGGAGGAAGG
TAGAGGAGGTATTAAGGTGGCTTGGGTGGATGTGTTGGGTAAATCTTGGTGTCTTCGGGCGATCTTACGTAAGCGAGAGAAGCTGAAGCATCTTGTAAGGATGAAGGTGG
GAAATGGTAATAGTTTTAGAGTTTGGCTTGATCCGTGGTTGCCGGAGGGTGCCATTTTGGAGCAGGTTGGGGAGAGAGTGATGTATGATGCAGCTAGTCGGAGGAAGGCT
AGACTCTCTGACTTTATTGACCCAGATGGAGAATGGCTTTGGCCTCGAGTTTCTTTGGAATTAATTGACCTATGGGAGAGGGTTCAGGAGGTCAGTCCGTGTCTTAGTGT
TAGTGATAGTTGGGTATGGGTTCCTGGTCGTCGGGGTGGTTTCTCTATTGCAAGTGCATGGGAAGCTGTTCGTCCTAGGGGTGGTCGGGTTCTATGGGATGGTTTATTGT
GGGGTGGGGGAAATATCCAAAAACATTTCTTCTGTGCGTGGTTGGCTATTAAAGATAGGTTGGGTACTATAGATAGATTGCATAGGTGGGATAGTTCATCTCGCGATCAC
TTATTCTTTTCGTGTTCGTTTGGGGGGGGGGGGGATGTTTGGTCTAGGGTTCTTCGGATCATGGGTTCCTCTCATAGGATTGGGCATTGGAGGGTTGAGTTGTCTTGGAT
TTGTCATTAA
Protein sequenceShow/hide protein sequence
MIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSV
LRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVLGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKA
RLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAVRPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSSSRDH
LFFSCSFGGGGDVWSRVLRIMGSSHRIGHWRVELSWICH