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IVF0005434 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005434
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:24460443..24460871
RNA-Seq ExpressionIVF0005434
SyntenyIVF0005434
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035524.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]4.44e-4163.38Show/hide
Query:  MHLQRRKRAELEDFQCSSQENASENAPNSVFSSWGKS-DPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKR
        MHLQ+RKRAELEDF   SQEN SENA N VFSSWGK   P+    LF +   S  +    T + ST T  ML DTFSQGI ++ASSLEGE RCDPK+SK 
Subjt:  MHLQRRKRAELEDFQCSSQENASENAPNSVFSSWGKS-DPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKR

Query:  WPMLPTSGECSSRVRNHWKCTCSEGNGLSSRTSGVCSKKTRA
        WPMLPT  + SS V+NHWKCTC E N LSSRTS V  KKTRA
Subjt:  WPMLPTSGECSSRVRNHWKCTCSEGNGLSSRTSGVCSKKTRA

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.13e-3771.55Show/hide
Query:  PNSVFSSWG-KSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNHWKCTCSEGN
        P S FS  G KSD  TVSSL +VLVI+LSIF ARTPR STHT GML D FS+GI +EASSLEGEL C+PKRSKRW MLPTS E SS +RNH KCT  EGN
Subjt:  PNSVFSSWG-KSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNHWKCTCSEGN

Query:  GLSSRTSGVCSKKTRA
        GLSSRT     KKTRA
Subjt:  GLSSRTSGVCSKKTRA

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]1.14e-4175Show/hide
Query:  DFQCSSQENASENAPNSVFSSWGKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSR
        DF+CSSQEN S+NA +SVFSSW KS P TVSS+  VLVI LSIFGA  PR STHT GML D FS GI REA SLEGEL CDPKRS+RWPMLPTSG+ SS 
Subjt:  DFQCSSQENASENAPNSVFSSWGKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSR

Query:  VRNH
        VRNH
Subjt:  VRNH

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]1.40e-4039.93Show/hide
Query:  MHLQRRKRAELEDFQCSSQENASENAPNSVFSSWGK----------------------------------------------------------------
        MHLQRRKR ELEDF+CSSQEN SENAP+S FSSWGK                                                                
Subjt:  MHLQRRKRAELEDFQCSSQENASENAPNSVFSSWGK----------------------------------------------------------------

Query:  --------------------------SDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQ---------------------------------
                                  SDP TVS+L  VLV SLSIFGA TPR STHT GML DTFS+                                 
Subjt:  --------------------------SDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQ---------------------------------

Query:  ---------------------GISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNHWKCTCSEGNGLSSRTSGVCSKKT
                             GI REASSLEGEL CDPK SKRWPMLPT GE SS  RNHWKCTCSEGNGLSSRTSG   +KT
Subjt:  ---------------------GISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNHWKCTCSEGNGLSSRTSGVCSKKT

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]5.32e-4374.56Show/hide
Query:  NSVFSSWGKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNHWKCTCSEGNGL
        +SVFSSW K+   TVSSL+++LVISL IFGA TPR STHTL ML D FSQGI REASSLEGELRCDPK  KRWPML TSGE SS VRN+WK TCSE N L
Subjt:  NSVFSSWGKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNHWKCTCSEGNGL

Query:  SSRTSGVCSKKTRA
         SRTS VC KKT A
Subjt:  SSRTSGVCSKKTRA

TrEMBL top hitse value%identityAlignment
A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein4.2e-3245.33Show/hide
Query:  LQRRKRAELEDFQCSSQENASENAPNSVFSS---------------------------------------------------W-----------------
        LQR KR EL+DF+CSSQENA+E AP+S+FSS                                                   W                 
Subjt:  LQRRKRAELEDFQCSSQENASENAPNSVFSS---------------------------------------------------W-----------------

Query:  ------------------GKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNH
                           KSD  TVSSL +VLVI+LSIF ARTPR STHT GML D FS+GI +EASSLEGEL C+PKRSKRW MLPTS E SS +RNH
Subjt:  ------------------GKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNH

Query:  WKCTCSEGNGLSSRTSGVCSKKTRA
         KCT  EGNGLSSRT     KKTRA
Subjt:  WKCTCSEGNGLSSRTSGVCSKKTRA

A0A5D3CZ27 ULP_PROTEASE domain-containing protein1.9e-3275Show/hide
Query:  DFQCSSQENASENAPNSVFSSWGKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSR
        DF+CSSQEN S+NA +SVFSSW KS P TVSS+  VLVI LSIFGA  PR STHT GML D FS GI REA SLEGEL CDPKRS+RWPMLPTSG+ SS 
Subjt:  DFQCSSQENASENAPNSVFSSWGKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSR

Query:  VRNH
        VRNH
Subjt:  VRNH

A0A5D3DFP2 Uncharacterized protein2.0e-3439.93Show/hide
Query:  MHLQRRKRAELEDFQCSSQENASENAPNSVFSSWG-----------------------------------------------------------------
        MHLQRRKR ELEDF+CSSQEN SENAP+S FSSWG                                                                 
Subjt:  MHLQRRKRAELEDFQCSSQENASENAPNSVFSSWG-----------------------------------------------------------------

Query:  -------------------------KSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQ---------------------------------
                                 KSDP TVS+L  VLV SLSIFGA TPR STHT GML DTFS+                                 
Subjt:  -------------------------KSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQ---------------------------------

Query:  ---------------------GISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNHWKCTCSEGNGLSSRTSGVCSKKT
                             GI REASSLEGEL CDPK SKRWPMLPT GE SS  RNHWKCTCSEGNGLSSRTSG   +KT
Subjt:  ---------------------GISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNHWKCTCSEGNGLSSRTSGVCSKKT

A0A5D3DIF8 Gag/pol protein3.7e-3674.56Show/hide
Query:  NSVFSSWGKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNHWKCTCSEGNGL
        +SVFSSW K+   TVSSL+++LVISL IFGA TPR STHTL ML D FSQGI REASSLEGELRCDPK  KRWPML TSGE SS VRN+WK TCSE N L
Subjt:  NSVFSSWGKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECSSRVRNHWKCTCSEGNGL

Query:  SSRTSGVCSKKTRA
         SRTS VC KKT A
Subjt:  SSRTSGVCSKKTRA

A0A5D3E5W4 NBS-LRR type resistance protein2.2e-3363.38Show/hide
Query:  MHLQRRKRAELEDFQCSSQENASENAPNSVFSSWG-KSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKR
        MHLQ+RKRAELEDF   SQEN SENA N VFSSWG K  P+    LF +   S  +    T + ST T  ML DTFSQGI ++ASSLEGE RCDPK+SK 
Subjt:  MHLQRRKRAELEDFQCSSQENASENAPNSVFSSWG-KSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKR

Query:  WPMLPTSGECSSRVRNHWKCTCSEGNGLSSRTSGVCSKKTRA
        WPMLPT  + SS V+NHWKCTC E N LSSRTS V  KKTRA
Subjt:  WPMLPTSGECSSRVRNHWKCTCSEGNGLSSRTSGVCSKKTRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTTGCAGCGAAGGAAACGAGCTGAGCTCGAGGACTTCCAGTGCTCATCCCAAGAAAATGCGAGCGAGAATGCCCCAAACTCAGTTTTCTCATCCTGGGGTAAAAG
TGATCCCTCGACGGTTTCTTCCCTTTTCTACGTATTGGTCATAAGTCTTTCAATCTTCGGGGCTCGTACTCCGAGGGCCTCAACCCATACTCTTGGCATGCTCCTTGACA
CGTTTTCCCAAGGTATAAGTCGTGAAGCGAGCTCGTTAGAGGGAGAACTGAGGTGCGACCCAAAACGGTCCAAACGATGGCCCATGCTTCCAACGAGTGGCGAATGCTCG
TCTCGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGTTGAGCTCAAGGACTTCTGGTGTTTGTTCCAAGAAAACGCGAGCGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACTTGCAGCGAAGGAAACGAGCTGAGCTCGAGGACTTCCAGTGCTCATCCCAAGAAAATGCGAGCGAGAATGCCCCAAACTCAGTTTTCTCATCCTGGGGTAAAAG
TGATCCCTCGACGGTTTCTTCCCTTTTCTACGTATTGGTCATAAGTCTTTCAATCTTCGGGGCTCGTACTCCGAGGGCCTCAACCCATACTCTTGGCATGCTCCTTGACA
CGTTTTCCCAAGGTATAAGTCGTGAAGCGAGCTCGTTAGAGGGAGAACTGAGGTGCGACCCAAAACGGTCCAAACGATGGCCCATGCTTCCAACGAGTGGCGAATGCTCG
TCTCGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGTTGAGCTCAAGGACTTCTGGTGTTTGTTCCAAGAAAACGCGAGCGTTTTAA
Protein sequenceShow/hide protein sequence
MHLQRRKRAELEDFQCSSQENASENAPNSVFSSWGKSDPSTVSSLFYVLVISLSIFGARTPRASTHTLGMLLDTFSQGISREASSLEGELRCDPKRSKRWPMLPTSGECS
SRVRNHWKCTCSEGNGLSSRTSGVCSKKTRAF