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IVF0005460 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005460
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr01:10892241..10892916
RNA-Seq ExpressionIVF0005460
SyntenyIVF0005460
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048168.1 uncharacterized protein E6C27_scaffold63G00690 [Cucumis melo var. makuwa]6.47e-11096.69Show/hide
Query:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
        MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
Subjt:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYE
        QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQE  + G +E
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYE

KAA0055376.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.54e-10294.48Show/hide
Query:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
        MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAV+LSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
Subjt:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYE
        QKWLTKLLGYDFEILYQPG LNKAADALSRVEPKIELHEM TSGIVDISVVCEEVDKDE LQKIVAKLKKEQE  + G +E
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYE

KAA0061073.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.54e-10294.48Show/hide
Query:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
        MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAV+LSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
Subjt:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYE
        QKWLTKLLGYDFEILYQPG LNKAADALSRVEPKIELHEM TSGIVDISVVCEEVDKDE LQKIVAKLKKEQE  + G +E
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYE

TYK08088.1 uncharacterized protein E5676_scaffold265G002470 [Cucumis melo var. makuwa]2.99e-10292.82Show/hide
Query:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
        MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALK       VQPQF
Subjt:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYE
        QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQE  + G +E
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYE

TYK14624.1 uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa]7.18e-10597.08Show/hide
Query:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
        MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYS+KLSQRAQAKSIYERELMAV+LSVQRW+HYLLGRKFSILSDQKALKFLLEQREVQPQF
Subjt:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKE
        QKWLTKLLGYDFEILYQPGLLNKAADALSRVEP+IELHEM TSGIVDISVVCEEVDKDEELQKIVAKLKKE
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKE

TrEMBL top hitse value%identityAlignment
A0A5A7TYW6 Reverse transcriptase domain-containing protein1.4e-8895.14Show/hide
Query:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
        MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
Subjt:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYERTRG
        QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQE  + G +E   G
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYERTRG

A0A5A7UM77 Ty3/gypsy retrotransposon protein5.0e-8692.97Show/hide
Query:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
        MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAV+LSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
Subjt:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYERTRG
        QKWLTKLLGYDFEILYQPG LNKAADALSRVEPKIELHEM TSGIVDISVVCEEVDKDE LQKIVAKLKKEQE  + G +E   G
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYERTRG

A0A5A7UYM1 Ty3/gypsy retrotransposon protein5.0e-8692.97Show/hide
Query:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
        MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAV+LSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
Subjt:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYERTRG
        QKWLTKLLGYDFEILYQPG LNKAADALSRVEPKIELHEM TSGIVDISVVCEEVDKDE LQKIVAKLKKEQE  + G +E   G
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYERTRG

A0A5D3BJ50 Ty3/gypsy retrotransposon protein5.0e-8692.97Show/hide
Query:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
        MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAV+LSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
Subjt:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYERTRG
        QKWLTKLLGYDFEILYQPG LNKAADALSRVEPKIELHEM TSGIVDISVVCEEVDKDE LQKIVAKLKKEQE  + G +E   G
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYERTRG

A0A5D3CUL0 Reverse transcriptase domain-containing protein4.3e-8597.08Show/hide
Query:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF
        MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYS+KLSQRAQAKSIYERELMAV+LSVQRW+HYLLGRKFSILSDQKALKFLLEQREVQPQF
Subjt:  MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKE
        QKWLTKLLGYDFEILYQPGLLNKAADALSRVEP+IELHEM TSGIVDISVVCEEVDKDEELQKIVAKLKKE
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKE

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.6e-2342.97Show/hide
Query:  PVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQFQKWL
        P+L +PD++  FT+ TDAS   LGAVLSQ GHP+++ S+ L++     S  E+EL+A++ + + +RHYLLGR F I SD + L +L   ++   +  +W 
Subjt:  PVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQFQKWL

Query:  TKLLGYDFEILYQPGLLNKAADALSRVE
         KL  +DF+I Y  G  N  ADALSR++
Subjt:  TKLLGYDFEILYQPGLLNKAADALSRVE

P10401 Retrovirus-related Pol polyprotein from transposon gypsy7.4e-1838.1Show/hide
Query:  VLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLG-RKFSILSDQKALKFLLEQREVQPQFQKWL
        +L  PD+  PF + TDAS SG+GAVLSQ G PI   S+ L Q  Q  +  EREL+A++ ++ + +++L G R+ +I +D + L F +  R    + ++W 
Subjt:  VLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLG-RKFSILSDQKALKFLLEQREVQPQFQKWL

Query:  TKLLGYDFEILYQPGLLNKAADALSR
        + +  ++ ++ Y+PG  N  ADALSR
Subjt:  TKLLGYDFEILYQPGLLNKAADALSR

P20825 Retrovirus-related Pol polyprotein from transposon 2979.0e-2442.75Show/hide
Query:  PVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQFQKWL
        P+L LPD+   F + TDAS   LGAVLSQ GHPI+F S+ L+      S  E+EL+A++ + + +RHYLLGR+F I SD + L++L   +E   + ++W 
Subjt:  PVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQFQKWL

Query:  TKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRT
         +L  Y F+I Y  G  N  ADALSR++ +   H   T
Subjt:  TKLLGYDFEILYQPGLLNKAADALSRVEPKIELHEMRT

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.8e-1735.56Show/hide
Query:  VLALPDWSLPFTIETDASGSGLGAVLSQ----RGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGR-KFSILSDQKALKFLLEQREVQPQF
        +LA P ++ PF + TDAS   +GAVLSQ    R  PIA+ S+ L++  +  +  E+E++A++ S+   R YL G     + +D + L F L  R    + 
Subjt:  VLALPDWSLPFTIETDASGSGLGAVLSQ----RGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGR-KFSILSDQKALKFLLEQREVQPQF

Query:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKI
        ++W  ++  Y+ E++Y+PG  N  ADALSR+ P++
Subjt:  QKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKI

Q9UR07 Transposon Tf2-11 polyprotein4.0e-1636.88Show/hide
Query:  PVLALPDWSLPFTIETDASGSGLGAVLSQRG-----HPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLG--RKFSILSDQKAL--KFLLEQRE
        PVL   D+S    +ETDAS   +GAVLSQ+      +P+ +YS K+S+     S+ ++E++A++ S++ WRHYL      F IL+D + L  +   E   
Subjt:  PVLALPDWSLPFTIETDASGSGLGAVLSQRG-----HPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLG--RKFSILSDQKAL--KFLLEQRE

Query:  VQPQFQKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIE
           +  +W   L  ++FEI Y+PG  N  ADALSR+  + E
Subjt:  VQPQFQKWLTKLLGYDFEILYQPGLLNKAADALSRVEPKIE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTATACCAGTCTTGGCACTACCAGATTGGAGTCTGCCCTTTACCATAGAAACTGACGCTTCAGGCAGCGGCTTGGGAGCAGTTTTATCACAAAGAGGGCATCC
CATAGCCTTTTATAGTCAGAAGCTCTCGCAAAGAGCCCAGGCAAAGTCGATATATGAAAGAGAATTGATGGCTGTGTTATTATCTGTACAAAGGTGGAGGCATTACCTAT
TGGGAAGGAAGTTTTCTATCCTTTCAGACCAGAAGGCTTTGAAGTTTCTGTTAGAACAGAGGGAAGTGCAGCCCCAATTCCAGAAATGGCTAACCAAACTCCTAGGGTAT
GATTTTGAAATACTCTACCAACCGGGCCTACTCAACAAAGCAGCAGATGCTCTCTCAAGAGTGGAACCAAAGATAGAGCTTCATGAGATGAGAACTTCGGGTATTGTCGA
CATCAGTGTTGTGTGTGAGGAAGTTGACAAGGATGAAGAGCTACAGAAAATTGTGGCAAAGCTGAAGAAGGAACAAGAAGAGGCCATTCGGGGTTCCTACGAACGTACAA
GAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTATACCAGTCTTGGCACTACCAGATTGGAGTCTGCCCTTTACCATAGAAACTGACGCTTCAGGCAGCGGCTTGGGAGCAGTTTTATCACAAAGAGGGCATCC
CATAGCCTTTTATAGTCAGAAGCTCTCGCAAAGAGCCCAGGCAAAGTCGATATATGAAAGAGAATTGATGGCTGTGTTATTATCTGTACAAAGGTGGAGGCATTACCTAT
TGGGAAGGAAGTTTTCTATCCTTTCAGACCAGAAGGCTTTGAAGTTTCTGTTAGAACAGAGGGAAGTGCAGCCCCAATTCCAGAAATGGCTAACCAAACTCCTAGGGTAT
GATTTTGAAATACTCTACCAACCGGGCCTACTCAACAAAGCAGCAGATGCTCTCTCAAGAGTGGAACCAAAGATAGAGCTTCATGAGATGAGAACTTCGGGTATTGTCGA
CATCAGTGTTGTGTGTGAGGAAGTTGACAAGGATGAAGAGCTACAGAAAATTGTGGCAAAGCTGAAGAAGGAACAAGAAGAGGCCATTCGGGGTTCCTACGAACGTACAA
GAGGATGA
Protein sequenceShow/hide protein sequence
MTTIPVLALPDWSLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHYLLGRKFSILSDQKALKFLLEQREVQPQFQKWLTKLLGY
DFEILYQPGLLNKAADALSRVEPKIELHEMRTSGIVDISVVCEEVDKDEELQKIVAKLKKEQEEAIRGSYERTRG