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IVF0005461 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005461
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr10:25089932..25090099
RNA-Seq ExpressionIVF0005461
SyntenyIVF0005461
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051928.1 retrotransposon protein [Cucumis melo var. makuwa]2.53e-0755.56Show/hide
Query:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA
        MS+ DMM +R  +SN  R+SS+G KRKR  Q  +T  + RDAMD ANDQ+R+IA
Subjt:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA

KAA0054131.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]1.81e-2297.92Show/hide
Query:  MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVI
        MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLR I
Subjt:  MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVI

KAA0056454.1 retrotransposon protein [Cucumis melo var. makuwa]8.74e-1062.96Show/hide
Query:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA
        +S EDMM ARP R N CR SSSGSKRK    TI T+ VI +A+DC ND LR IA
Subjt:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA

KAA0066582.1 retrotransposon protein [Cucumis melo var. makuwa]8.69e-0854.55Show/hide
Query:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN
        MS EDMM A+P RS+ CR+ SSG KRK   Q ++T+ VIR  M C ND LR I +
Subjt:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN

TYK15318.1 retrotransposon protein [Cucumis melo var. makuwa]1.25e-0956.36Show/hide
Query:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN
        MS+EDMM A+P RS+ CR+ SSG KRK   Q ++T+ VIRD M C ND LR I +
Subjt:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN

TrEMBL top hitse value%identityAlignment
A0A5A7UKR2 RING-H2 finger protein ATL668.1e-1697.92Show/hide
Query:  MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVI
        MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLR I
Subjt:  MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVI

A0A5A7UMN4 Retrotransposon protein1.5e-0662.96Show/hide
Query:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA
        +S EDMM ARP R N CR SSSGSKRK    TI T+ VI +A+DC ND LR IA
Subjt:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA

A0A5A7VE05 Retrotransposon protein3.8e-0554.55Show/hide
Query:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN
        MS EDMM A+P RS+ CR+ SSG KRK   Q ++T+ VIR  M C ND LR I +
Subjt:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN

A0A5D3CM76 Retrotransposon protein1.9e-0455.56Show/hide
Query:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA
        MS+ DMM +R  +SN  R+SS+G KRKR  Q  +T  + RDAMD ANDQ+R+IA
Subjt:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA

A0A5D3CVP7 Retrotransposon protein2.6e-0656.36Show/hide
Query:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN
        MS+EDMM A+P RS+ CR+ SSG KRK   Q ++T+ VIRD M C ND LR I +
Subjt:  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGT
CGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGT
CGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG
Protein sequenceShow/hide protein sequence
MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN