; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0005478 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005478
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:10416739..10416957
RNA-Seq ExpressionIVF0005478
SyntenyIVF0005478
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046569.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.61e-1360.34Show/hide
Query:  MRKDSKATRRETRKLRFYYVKGDNVIRVTSEEGIALGSNGEAFGRMMQEEIYTPKRMR
        M+++S  TRRE  + RFYYVK  NVIRV  E+GIAL +  EAFGR++ EE+YTPKR+R
Subjt:  MRKDSKATRRETRKLRFYYVKGDNVIRVTSEEGIALGSNGEAFGRMMQEEIYTPKRMR
TrEMBL top hitse value%identityAlignment
A0A5A7TZA6 Ty3-gypsy retrotransposon protein5.1e-1060.34Show/hide
Query:  MRKDSKATRRETRKLRFYYVKGDNVIRVTSEEGIALGSNGEAFGRMMQEEIYTPKRMR
        M+++S  TRRE  + RFYYVK  NVIRV  E+GIAL +  EAFGR++ EE+YTPKR+R
Subjt:  MRKDSKATRRETRKLRFYYVKGDNVIRVTSEEGIALGSNGEAFGRMMQEEIYTPKRMR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAAAGATAGTAAGGCGACACGAAGAGAAACACGTAAGCTAAGATTCTATTACGTCAAGGGAGACAACGTGATAAGGGTAACTAGTGAGGAAGGCATTGCATTGGG
GTCCAACGGTGAGGCATTTGGTAGGATGATGCAAGAAGAAATATATACTCCCAAGAGAATGAGGCGAGGAACTAAACGTCTTGTCAAGCGATATGACAACTTATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAAAAGATAGTAAGGCGACACGAAGAGAAACACGTAAGCTAAGATTCTATTACGTCAAGGGAGACAACGTGATAAGGGTAACTAGTGAGGAAGGCATTGCATTGGG
GTCCAACGGTGAGGCATTTGGTAGGATGATGCAAGAAGAAATATATACTCCCAAGAGAATGAGGCGAGGAACTAAACGTCTTGTCAAGCGATATGACAACTTATTGTGA
Protein sequenceShow/hide protein sequence
MRKDSKATRRETRKLRFYYVKGDNVIRVTSEEGIALGSNGEAFGRMMQEEIYTPKRMRRGTKRLVKRYDNLL