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IVF0005505 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005505
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description30S ribosomal protein S13, putative
Genome locationchr09:11488227..11488999
RNA-Seq ExpressionIVF0005505
SyntenyIVF0005505
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047526.1 small ribosomal subunit protein S13 [Cucumis melo var. makuwa]1.43e-7998.36Show/hide
Query:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQR
        + IQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQR
Subjt:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQR

Query:  TKTNARTMKSKQTHVGKRKTFC
        TKTNARTMKSKQTHVGKRKTFC
Subjt:  TKTNARTMKSKQTHVGKRKTFC

XP_004140326.1 small ribosomal subunit protein S13, mitochondrial isoform X1 [Cucumis sativus]7.11e-3255.56Show/hide
Query:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLP
        + IQSIHLGAGM+IPDSKPLKFALQ INGIG+ARANQVLAQL  +  L K L K+  +FL        +        +  +     + C +    E  LP
Subjt:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLP

Query:  CRGQRTKTNARTMKSKQTHVGKRKTF
        CRGQRTKTNART+KSKQT VGKRK F
Subjt:  CRGQRTKTNARTMKSKQTHVGKRKTF

XP_011655183.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus]5.37e-2553.04Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLPCRGQRTKTNAR
        M+IPDSKPLKFALQ INGIG+ARANQVLAQL  +  L K L K+  +FL        +        +  +     + C +    E  LPCRGQRTKTNAR
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLPCRGQRTKTNAR

Query:  TMKSKQTHVGKRKTF
        T+KSKQT VGKRK F
Subjt:  TMKSKQTHVGKRKTF

XP_038876075.1 small ribosomal subunit protein S13, mitochondrial-like isoform X1 [Benincasa hispida]5.31e-2346.83Show/hide
Query:  QIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPC
        +I+SIH+ AGM+IP++KPLK+ALQ INGIG++RANQVL++L  +  L K L K   + L        +     N  K  +   +      G+     LPC
Subjt:  QIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPC

Query:  RGQRTKTNARTMKSKQTHV-GKRKTF
        RGQRTKTNARTMKSKQ  V G +K F
Subjt:  RGQRTKTNARTMKSKQTHV-GKRKTF

XP_038876076.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Benincasa hispida]2.91e-2346.83Show/hide
Query:  QIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPC
        +I+SIH+ AGM+IP++KPLK+ALQ INGIG++RANQVL++L  +  L K L K   + L        +     N  K  +   +      G+     LPC
Subjt:  QIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPC

Query:  RGQRTKTNARTMKSKQTHV-GKRKTF
        RGQRTKTNARTMKSKQ  V G +K F
Subjt:  RGQRTKTNARTMKSKQTHV-GKRKTF

TrEMBL top hitse value%identityAlignment
A0A0A0KMX9 Uncharacterized protein9.5e-2555.56Show/hide
Query:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLP
        + IQSIHLGAGM+IPDSKPLKFALQ INGIG+ARANQVLAQL  +  L K L K+  +FL        +        +  +     + C +    E  LP
Subjt:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLP

Query:  CRGQRTKTNARTMKSKQTHVGKRKTF
        CRGQRTKTNART+KSKQT VGKRK F
Subjt:  CRGQRTKTNARTMKSKQTHVGKRKTF

A0A5D3DT03 Small ribosomal subunit protein S137.4e-6298.36Show/hide
Query:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQR
        + IQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQR
Subjt:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQR

Query:  TKTNARTMKSKQTHVGKRKTFC
        TKTNARTMKSKQTHVGKRKTFC
Subjt:  TKTNARTMKSKQTHVGKRKTFC

A0A6J1CKC9 30S ribosomal protein S13, chloroplastic-like3.3e-1747.97Show/hide
Query:  IQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCR
        I+SIH+ AGM+IPD KPL+FALQ I+GIG++RANQVLA+L     L K L K   + L        +     +  K  +   ++     G+     LPCR
Subjt:  IQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCR

Query:  GQRTKTNARTMKSKQTHV-GKRK
        GQRTKTNARTMKSKQ  V GK+K
Subjt:  GQRTKTNARTMKSKQTHV-GKRK

A0A6J1FGA3 30S ribosomal protein S13, chloroplastic-like4.3e-1745.97Show/hide
Query:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LP
        + I SIH+ AG++IPD+KPLK+ALQ INGIG++RA QVLA+L  +  L K L K   + L        +        K  +   +      G+     LP
Subjt:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LP

Query:  CRGQRTKTNARTMKSKQTHVGKRK
        CRGQRTKTNARTMKSKQ   GK+K
Subjt:  CRGQRTKTNARTMKSKQTHVGKRK

A0A6J1JVL8 small ribosomal subunit protein S13, mitochondrial-like7.3e-1745.97Show/hide
Query:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LP
        + I+SIH+ AGM+IPD+KPLK+ALQ INGIG++RA QVLA+L  +  L K L K   + L        +        K  +   +      G+     LP
Subjt:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LP

Query:  CRGQRTKTNARTMKSKQTHVGKRK
        CRGQRTKTNARTMKSKQ    K+K
Subjt:  CRGQRTKTNARTMKSKQTHVGKRK

SwissProt top hitse value%identityAlignment
C0Q9V0 30S ribosomal protein S131.9e-0633.05Show/hide
Query:  AGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSL-----FLQTRFP---STRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRT
        AG+ +P +K ++ AL  I GIG+ R+ Q+L ++    +L    L E  +      + + F      R  +S +N+ +   LGC +       LPCRGQRT
Subjt:  AGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSL-----FLQTRFP---STRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRT

Query:  KTNARTMKSKQTHVGKRK
         TNART K  +    K+K
Subjt:  KTNARTMKSKQTHVGKRK

P42732 30S ribosomal protein S13, chloroplastic1.8e-0931.3Show/hide
Query:  GMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNA
        G++IP +K ++++LQ I+GIG+ RA Q+L  L  +  + K + +E  + L+       ++          +   ++     G+     LPCRGQRTK N 
Subjt:  GMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNA

Query:  RTMKSKQTHV-GKRK
        RT+K K+  + GK+K
Subjt:  RTMKSKQTHV-GKRK

P82163 30S ribosomal protein S13, chloroplastic4.6e-0833.07Show/hide
Query:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLD-----MSWINVFKGTLLGC-RKFSAIEGLL
        + I+ + +G  ++IP++K ++++LQ I+GIG++RA Q+L  L  +  L K L ++  L ++       ++      + I + +   + C R    I+G L
Subjt:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLD-----MSWINVFKGTLLGC-RKFSAIEGLL

Query:  PCRGQRTKTNARTMK-SKQTHV-GKRK
        PCRGQRTK N RT+K  K+  + GK+K
Subjt:  PCRGQRTKTNARTMK-SKQTHV-GKRK

Q8LPW2 Small ribosomal subunit protein S13, mitochondrial7.5e-1133.6Show/hide
Query:  MQIQSIHLGAGM--KIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLD---MSWINVFKGTLLGCRKFSAIEGL--
        +++Q+I++G G+  +IPD+K L +ALQ ++GIG+++A  ++A+L  +    K L K     ++       +       +    G L+G + +  I  +  
Subjt:  MQIQSIHLGAGM--KIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLD---MSWINVFKGTLLGCRKFSAIEGL--

Query:  LPCRGQRTKTNARTMKSKQTHVGKR
        LPCRGQRT TNART +S++T  G R
Subjt:  LPCRGQRTKTNARTMKSKQTHVGKR

Q9CA19 Small ribosomal subunit protein S13, mitochondrial2.3e-0732.8Show/hide
Query:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL-----QTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLP
        +++Q I +G   ++P++KPLK  LQ + GIG+ +++QVL  L     L + L  +  + L     Q +            + +   + C + S     LP
Subjt:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL-----QTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLP

Query:  CRGQRTKTNARTMKSKQTHV-GKRK
        CRGQRT TNART K K   + GK+K
Subjt:  CRGQRTKTNARTMKSKQTHV-GKRK

Arabidopsis top hitse value%identityAlignment
AT1G77750.1 Ribosomal protein S13/S18 family1.6e-0832.8Show/hide
Query:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL-----QTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLP
        +++Q I +G   ++P++KPLK  LQ + GIG+ +++QVL  L     L + L  +  + L     Q +            + +   + C + S     LP
Subjt:  MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL-----QTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLP

Query:  CRGQRTKTNARTMKSKQTHV-GKRK
        CRGQRT TNART K K   + GK+K
Subjt:  CRGQRTKTNARTMKSKQTHV-GKRK

AT5G14320.1 Ribosomal protein S13/S18 family1.3e-1031.3Show/hide
Query:  GMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNA
        G++IP +K ++++LQ I+GIG+ RA Q+L  L  +  + K + +E  + L+       ++          +   ++     G+     LPCRGQRTK N 
Subjt:  GMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNA

Query:  RTMKSKQTHV-GKRK
        RT+K K+  + GK+K
Subjt:  RTMKSKQTHV-GKRK

AT5G14320.2 Ribosomal protein S13/S18 family4.1e-0435.29Show/hide
Query:  GMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQ
        G++IP +K ++++LQ I+GIG+ RA Q+L  L  +  + K + +E  + L+
Subjt:  GMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATCCAGTCAATTCATTTAGGAGCAGGTATGAAGATTCCCGATAGCAAACCACTCAAATTTGCACTTCAGTGCATCAATGGAATTGGCCAAGCGAGAGCA
AACCAAGTTCTTGCCCAGCTTCCTTGGAAAACAAGCTTGCCAAAGATATTACTAAAAGAGAGCTCCTTGTTCTTGCAGACCAGATTTCCAAGTACACGGTTGGAC
ATGAGCTGGATAAATGTGTTCAAAGGGACATTGCTAGGTTGCAGGAAATTCAGTGCCATAGAGGGATTATTACCATGTAGAGGCCAACGAACGAAGACTAATGCT
AGGACTATGAAGTCGAAACAGACCCATGTTGGAAAGAGGAAAACCTTTTGTTGA
mRNA sequenceShow/hide mRNA sequence
GAAGGAATGTGTGGATGATACATGCAGATCCAGTCAATTCATTTAGGAGCAGGTATGAAGATTCCCGATAGCAAACCACTCAAATTTGCACTTCAGTGCATCAAT
GGAATTGGCCAAGCGAGAGCAAACCAAGTTCTTGCCCAGCTTCCTTGGAAAACAAGCTTGCCAAAGATATTACTAAAAGAGAGCTCCTTGTTCTTGCAGACCAGA
TTTCCAAGTACACGGTTGGACATGAGCTGGATAAATGTGTTCAAAGGGACATTGCTAGGTTGCAGGAAATTCAGTGCCATAGAGGGATTATTACCATGTAGAGGC
CAACGAACGAAGACTAATGCTAGGACTATGAAGTCGAAACAGACCCATGTTGGAAAGAGGAAAACCTTTTGTTGAGCAAATGGTTTTGCAGTTTCTCCTCTCTTC
TTGCGTTCTTGAACTGATTGATTATAAACATATTTGGATTCCACCAAGTTTCATTATTTCTCTTA
Protein sequenceShow/hide protein sequence
MQIQSIHLGAGMKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNA
RTMKSKQTHVGKRKTFC