CuGenDBv2

Gene ID	IVF0005514
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Nucleolar protein 16
Genome location	chr01:28807718..28809458
RNA-Seq Expression	IVF0005514
Synteny	IVF0005514
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136032.1 uncharacterized protein LOC101209910 [Cucumis sativus]

2.15e-130

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPD+VL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK

XP_008451586.1 PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo]

1.03e-132

100

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

3.81e-122

91.71

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS    DDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

2.20e-121

91.19

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS    DDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYH CLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

1.74e-123

92.27

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP
        MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWD+K  VI NYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS    D+P
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS----DDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL RK
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAV9 Nucleolar protein 16

3.7e-100

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPD+VL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK

A0A1S3BSM4 Nucleolar protein 16

6.7e-102

100

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK

A0A5A7VLA5 Nucleolar protein 16

6.7e-102

100

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK

A0A6J1GRW5 Nucleolar protein 16

9.7e-93

90.67

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

A0A6J1JMQ4 Nucleolar protein 16

8.8e-94

91.71

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQV    PPSDDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

6.5e-65

62.76

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV-----PPSDD
        M RSRRKY+ SR KV+V LPK+NPN+FKP+F  PPKLR+L+    ++ P WD++ SVIQNYKSFGVISNPNLL +R+RTDH+++ DSL V     PP+DD
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV-----PPSDD

Query:  P---DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILT
        P   +     SGS++EEDDLKTALGK+RKDGKSAPLQPLTT+QR H+ +L+EK+GDD + M+ D KLNSMQHSVATL KLC RY    DKNP++++
Subjt:  P---DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAAGGTCTCGAAGAAAGTACAAGAAATCTCGCCCAAAAGTTAAGGTTGGTTTGCCCAAAAGAAACCCTAATGTCTTCAAGCCGTCTTTTTGCATGCCGCCTAAGCT
CCGCTCCTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGGATGAGAAAGGAAGTGTCATTCAAAATTATAAATCCTTCGGTGTCATTTCTAATCCTAATTTGCTCA
GTGTTCGTTCCCGCACTGATCACATCGTTGAAAGCGACTCTCTCCAAGTCCCGCCATCCGATGACCCTGACTCCGTTCTTGATTCTTCCGGTAGTGATGTTGAAGAGGAC
GATTTGAAAACAGCGTTGGGAAAGAAGCGCAAAGATGGGAAATCTGCACCTCTACAACCGTTGACCACACTTCAGCGTGTTCATGTCGGTAAGTTAATCGAGAAATATGG
AGATGATTACCAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATC
CCTTGATATTGACTCGTAAATGA

mRNA sequence

Show/hide mRNA sequence

CTACGAAGTCCCAAATGAGTTCTTCATCTTCCACATATTAAAACCCTAGCCACCAATTTCCTTTTCTCCTTCCAATTCCCAGAGATGGGAAGGTCTCGAAGAAAGTACAA
GAAATCTCGCCCAAAAGTTAAGGTTGGTTTGCCCAAAAGAAACCCTAATGTCTTCAAGCCGTCTTTTTGCATGCCGCCTAAGCTCCGCTCCTTGCTCGCCGAACAATTTG
AAGAAGATCCAACATGGGATGAGAAAGGAAGTGTCATTCAAAATTATAAATCCTTCGGTGTCATTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATC
GTTGAAAGCGACTCTCTCCAAGTCCCGCCATCCGATGACCCTGACTCCGTTCTTGATTCTTCCGGTAGTGATGTTGAAGAGGACGATTTGAAAACAGCGTTGGGAAAGAA
GCGCAAAGATGGGAAATCTGCACCTCTACAACCGTTGACCACACTTCAGCGTGTTCATGTCGGTAAGTTAATCGAGAAATATGGAGATGATTACCAGAGGATGTTTATGG
ATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATCCCTTGATATTGACTCGTAAATGACGA
TAGCTCCTTCATCTTTCAAATTGTTTTGTTACGAGAGGTGAAAATCAGATAAGGTATGATCATGAAATTTTATCGAGCAATATTGTTTTGAAACTAAACGTATGAGCCTT
AATAGATAAATCATTCTTCCTGCTTCCTGTTGTTTTATTCCTATCAAGAAACTGCTCATAATTTGAATTTCATGTTTAGTTGCTCGCATCTAGGGGCTTCTTCATTTTGG
GGAAACTGATGGTGTGTTTGGAGTAATTTTGAG

Protein sequence

Show/hide protein sequence

MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVLDSSGSDVEED
DLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTRK

IVF0005514 (gene) of Melon (IVF77) v1 genome