; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0005552 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005552
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 reverse transcriptase like
Genome locationchr11:5161076..5161288
RNA-Seq ExpressionIVF0005552
SyntenyIVF0005552
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0043229 - intracellular organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032087.1 putative retrotransposon [Cucumis melo var. makuwa]8.51e-3998.57Show/hide
Query:  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR
        MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSA+LKGRQILDPILIANEVVEEYRGKRR
Subjt:  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR

KAA0043278.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.10e-1865.22Show/hide
Query:  DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR
        D   VKDFR ISLT L+YK+VA VLA+RLK+++ SII P Q A +KGRQILD ILIANE VE+YR K++
Subjt:  DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR

TYK13535.1 putative retrotransposon [Cucumis melo var. makuwa]5.98e-39100Show/hide
Query:  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR
        MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR
Subjt:  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR

TYK14532.1 reverse transcriptase [Cucumis melo var. makuwa]4.37e-1966.18Show/hide
Query:  DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKR
        DA+ VKDFRPISLTTLSYK+VAKVLAE LK+++ SI+ P QSA ++GRQILD +LIAN+ V++Y+ K+
Subjt:  DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKR

XP_038905468.1 probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 [Benincasa hispida]1.01e-2069.23Show/hide
Query:  VKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR
        VKDFRPIS +T+ YK++AKVLAERLKK++PS+I P QSA ++GRQILDP+LIANE VE YR K++
Subjt:  VKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR

TrEMBL top hitse value%identityAlignment
A0A5A7SRS6 Putative retrotransposon3.1e-2898.57Show/hide
Query:  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR
        MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSA+LKGRQILDPILIANEVVEEYRGKRR
Subjt:  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR

A0A5D3CPR1 Putative retrotransposon2.4e-28100Show/hide
Query:  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR
        MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR
Subjt:  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR

A0A5D3CSY0 Reverse transcriptase3.0e-1566.18Show/hide
Query:  DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKR
        DA+ VKDFRPISLTTLSYK+VAKVLAE LK+++ SI+ P QSA ++GRQILD +LIAN+ V++Y+ K+
Subjt:  DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKR

A0A5D3D1U8 Transposon TX1 uncharacterized3.3e-1463.08Show/hide
Query:  VKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR
        +KDFRPISLTT++YK++AKVL +RLKK++  II P QSA ++GR+ILDPIL+AN +VEEY  K +
Subjt:  VKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR

A0A5D3E0C0 LINE-1 retrotransposable element ORF2 protein5.6e-1465.22Show/hide
Query:  DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR
        D   VKDFR ISLT L+YK+VA VLA+RLK+++ SII P Q A +KGRQILD ILIANE VE+YR K++
Subjt:  DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR

SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein9.3e-0636.07Show/hide
Query:  DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVV
        D   +K++RP+SL +  YK+VAK ++ RLK ++  +I P QS  + GR I D + +  +++
Subjt:  DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTTCCAAGGTGAAAGATTTCAGGCCGATAAGTCTCACTACTTTGTCTTATAAGCTGGTGGCAAAAGTATTGGCTGAAAGACTTAAGAAGATTGTTCCAAGCAT
TATTGATCCTCCTCAAAGTGCCGTTTTAAAAGGAAGGCAAATTCTAGACCCCATTCTCATTGCCAACGAAGTGGTGGAAGAATACAGAGGAAAAAGAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGCTTCCAAGGTGAAAGATTTCAGGCCGATAAGTCTCACTACTTTGTCTTATAAGCTGGTGGCAAAAGTATTGGCTGAAAGACTTAAGAAGATTGTTCCAAGCAT
TATTGATCCTCCTCAAAGTGCCGTTTTAAAAGGAAGGCAAATTCTAGACCCCATTCTCATTGCCAACGAAGTGGTGGAAGAATACAGAGGAAAAAGAAGATAG
Protein sequenceShow/hide protein sequence
MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR