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IVF0005565 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005565
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibosomal protein L18ae family
Genome locationchr05:26570956..26573029
RNA-Seq ExpressionIVF0005565
SyntenyIVF0005565
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141063.1 uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus]1.05e-8697.74Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
        MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL
        ARRDPRERAGLAASAIAALACSI+LLIVVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL

XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]6.37e-88100Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
        MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL
        ARRDPRERAGLAASAIAALACSIILLIVVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL

XP_011648592.1 uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus]8.71e-11293.14Show/hide
Query:  NFGQARLPIYPTAFGRLKSSIKLTKWILRIRRVHTFINTSFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED
        +FGQARLPI+ TAFGRLKSSI+ TKWILRI RVH+ INT FSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED
Subjt:  NFGQARLPIYPTAFGRLKSSIKLTKWILRIRRVHTFINTSFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED

Query:  SQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALACSIILLIVVAVLL
        +QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPRERAGLAASAIAALACSI+LLIVVAVLL
Subjt:  SQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALACSIILLIVVAVLL

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]1.35e-8091.6Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSIILLIVVAV
        +RRDPRERAGLAAS+IAALACS+ILL+VVAV
Subjt:  ARRDPRERAGLAASAIAALACSIILLIVVAV

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]6.09e-8697.74Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
        MDPNGK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL
        ARRDPRERAGLAASAIAALACSIILL+VVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein2.5e-9692.27Show/hide
Query:  MDIRGTAASFVDDDKTAICNFGQARLPIYPTAFGRLKSSIKLTKWILRIRRVHTFINTSFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQG
        MDIRGT  SFVDDDKTAI +FGQARLPI+ TAFGRLKSSI+ TKWILRI RVH+ INT FSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQG
Subjt:  MDIRGTAASFVDDDKTAICNFGQARLPIYPTAFGRLKSSIKLTKWILRIRRVHTFINTSFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQG

Query:  KDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALACSIILLIVVAVLL
        KDAPDHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPRERAGLAASAIAALACSI+LLIVVAVLL
Subjt:  KDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALACSIILLIVVAVLL

A0A1S3CAZ9 uncharacterized protein LOC1034986583.8e-68100Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
        MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL
        ARRDPRERAGLAASAIAALACSIILLIVVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL

A0A5D3CGZ6 60S ribosomal protein L18a-13.8e-68100Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
        MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL
        ARRDPRERAGLAASAIAALACSIILLIVVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL

A0A6J1G4J6 uncharacterized protein LOC1114506862.4e-6290.98Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL
        +RRDPRERAGLAAS+IAALACS+ILL+VVAV L
Subjt:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL

A0A6J1KAT7 uncharacterized protein LOC1114937956.9e-6290.23Show/hide
Query:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRP+ARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL
        +RRDPRERAGLAAS+IAALACS+ILL+VVAV L
Subjt:  ARRDPRERAGLAASAIAALACSIILLIVVAVLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family3.1e-2264.04Show/hide
Query:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLIVVAVLL
        + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIAAL  S+ L+I V VL+
Subjt:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLIVVAVLL

AT1G54217.2 Ribosomal protein L18ae family1.1e-2261.05Show/hide
Query:  DAPDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLIVVAVLL
        D  +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIAAL  S+ L+I V VL+
Subjt:  DAPDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLIVVAVLL

AT4G26060.1 Ribosomal protein L18ae family4.2e-3560.16Show/hide
Query:  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPR
        D + +LVKSV+DKH  L+RP A+  S      KDA    + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF FP +WYYAT+LYF N  R+DPR
Subjt:  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPR

Query:  ERAGLAASAIAALACSIILLIVV
        ERAGLAASAI A+  S++LL++V
Subjt:  ERAGLAASAIAALACSIILLIVV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown1.8e-3353.73Show/hide
Query:  MDPNGKM---DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILY
        MD N K    +   +LVK ++D+H  L++ ++R  S      KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP +WYYA  LY
Subjt:  MDPNGKM---DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILY

Query:  FWN-ARRDPRERAGLAASAIAALACSIILLIVVA
        F N  R+DPRERAGLAASAI A+  S++LL++ A
Subjt:  FWN-ARRDPRERAGLAASAIAALACSIILLIVVA

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)2.6e-2965.22Show/hide
Query:  KDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLIVVA
        KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP +WYYA  LYF N  R+DPRERAGLAASAI A+  S++LL++ A
Subjt:  KDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILLIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTCGGGGAACTGCCGCTTCCTTTGTGGATGATGACAAGACGGCGATTTGTAATTTTGGTCAAGCTAGGTTGCCTATTTATCCGACGGCTTTTGGAAGATTGAA
AAGTTCCATAAAGTTAACAAAGTGGATACTGCGAATTCGAAGAGTTCATACTTTCATAAACACCAGCTTCAGCATGGATCCAAATGGAAAAATGGACCAGACGGTGCAAT
TGGTGAAATCAGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAA
TACACGCTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGCATAGGATGGTTTTCTTTCCTCCTGGGGTTTTTTTT
CCCACTAATGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGTGCTGGATTAGCTGCGTCTGCCATTGCTGCACTTGCATGTTCGA
TCATCTTGTTAATTGTGGTAGCTGTTCTTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATATTCGGGGAACTGCCGCTTCCTTTGTGGATGATGACAAGACGGCGATTTGTAATTTTGGTCAAGCTAGGTTGCCTATTTATCCGACGGCTTTTGGAAGATTGAA
AAGTTCCATAAAGTTAACAAAGTGGATACTGCGAATTCGAAGAGTTCATACTTTCATAAACACCAGCTTCAGCATGGATCCAAATGGAAAAATGGACCAGACGGTGCAAT
TGGTGAAATCAGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAA
TACACGCTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGCATAGGATGGTTTTCTTTCCTCCTGGGGTTTTTTTT
CCCACTAATGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGTGCTGGATTAGCTGCGTCTGCCATTGCTGCACTTGCATGTTCGA
TCATCTTGTTAATTGTGGTAGCTGTTCTTCTATGA
Protein sequenceShow/hide protein sequence
MDIRGTAASFVDDDKTAICNFGQARLPIYPTAFGRLKSSIKLTKWILRIRRVHTFINTSFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSK
YTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALACSIILLIVVAVLL