CuGenDBv2

Gene ID	IVF0005569
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ribosome maturation protein SBDS
Genome location	chr03:8711037..8713777
RNA-Seq Expression	IVF0005569
Synteny	IVF0005569
Gene Ontology terms	GO:0042256 - mature ribosome assembly (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR002140 - Ribosome maturation protein Sdo1/SBDS IPR018978 - Ribosome maturation protein Sdo1/SBDS, C-terminal IPR019783 - Ribosome maturation protein Sdo1/SBDS, N-terminal IPR036786 - Ribosome maturation protein SBDS, N-terminal domain superfamily IPR037188 - Ribosome maturation protein Sdo1/SBDS, central domain superfamily IPR039100 - Ribosome maturation protein Sdo1/SBDS-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146781.1 ribosome maturation protein SBDS [Cucumis sativus]

2.44e-227

89.97

Show/hide

Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG          SQIVYSNVSKGVLAKTK+LKAAFGTDDQTEICLKILKEGELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC
        S+DQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVEL PRQLKET+S IPQLSEALQKQTIS+NSDNAPKEGKRC
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC

Query:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
        STCNVAVGD TKFREH+KS+WHKHN               CTVELAMGDSESDLKEYSF
Subjt:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

XP_008466694.1 PREDICTED: ribosome maturation protein SBDS [Cucumis melo]

8.31e-235

93.04

Show/hide

Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG          SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC
        SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC

Query:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
        STCNVAVGDATKFREHHKSDWHKHN               CTVELAMGDSESDLKEYSF
Subjt:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

XP_022936066.1 ribosome maturation protein SBDS [Cucurbita moschata]

1.07e-212

84.17

Show/hide

Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSG          SQIVYSNVSKGVLAKTKDLKAAF TDDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN PSLLDKLN+WSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDD-YENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSEL G+FEVLSFCLHEEGDTNVDQY+DD +ENVEL PR +KE+ES+IPQLSEALQKQ ISV+  N  KEGKR
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDD-YENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKR

Query:  CSTCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
        CSTCNV VGDA +FREHHKS+WHKHN               C VE+AMGDSESDLKEYSF
Subjt:  CSTCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

XP_023535044.1 ribosome maturation protein SBDS [Cucurbita pepo subsp. pepo]

2.16e-212

84.44

Show/hide

Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSG          SQIVYSNVSKGVLAKTKDLKAAF TDDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN PSLLDKLNAWSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDD-YENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKR
        SND SGNQQRSIICELDPSFYRDCNPLMSEL G+FEVLSFCLHEEGDTNVDQY+DD +ENVEL PR +KE+ES+IPQLSEALQKQ ISV+  N  KEGKR
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDD-YENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKR

Query:  CSTCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
        CSTCNV VGDA +FREHHKS+WHKHN               C VE+AMGDSESDLKEYSF
Subjt:  CSTCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

XP_038886377.1 ribosome maturation protein SBDS [Benincasa hispida]

2.23e-223

88.02

Show/hide

Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG          SQIVYSNVSKGVLAKTKDLKAAF TDDQTEICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RYIVPEQN PSLLDKLNAWSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC
        SNDQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSFCLHEEGDTNVDQY+DDYENVEL PRQ+KE+ES+IPQL+EALQKQTISVNS+NA KEGKRC
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC

Query:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
        STCNV VGDAT+FREHHKS+WHKHN               CTVELAMGD+ESDLKEYSF
Subjt:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIY6 C2H2-type domain-containing protein

5.0e-177

89.97

Show/hide

Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG          SQIVYSNVSKGVLAKTK+LKAAFGTDDQTEICLKILKEGELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC
        S+DQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVEL PRQLKET+S IPQLSEALQKQTIS+NSDNAPKEGKRC
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC

Query:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
        STCNVAVGD TKFREH+KS+WHKHN               CTVELAMGDSESDLKEYSF
Subjt:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

A0A1S3CRW0 ribosome maturation protein SBDS

1.0e-182

93.04

Show/hide

Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG          SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC
        SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC

Query:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
        STCNVAVGDATKFREHHKSDWHKHN               CTVELAMGDSESDLKEYSF
Subjt:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

A0A5A7UXA4 Ribosome maturation protein SBDS

1.0e-182

93.04

Show/hide

Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG          SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC
        SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC

Query:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
        STCNVAVGDATKFREHHKSDWHKHN               CTVELAMGDSESDLKEYSF
Subjt:  STCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

A0A6J1F6G6 ribosome maturation protein SBDS

6.8e-166

84.17

Show/hide

Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSG          SQIVYSNVSKGVLAKTKDLKAAF TDDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN PSLLDKLN+WSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSEL G+FEVLSFCLHEEGDTNVDQY +DD+ENVEL PR +KE+ES+IPQLSEALQKQ ISV+  N  KEGKR
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKR

Query:  CSTCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
        CSTCNV VGDA +FREHHKS+WHKHN               C VE+AMGDSESDLKEYSF
Subjt:  CSTCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

A0A6J1IK36 ribosome maturation protein SBDS

1.5e-165

83.89

Show/hide

Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSG          SQIVYSNVSKGVLAKTKDLKAAF TDDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN PSLLDKLN+WSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSEL G+FEVLSFCLHEEGDTNVDQY +DD+ENVEL PR +KE+ES+IPQLSEALQKQ ISV+  N  KEGKR
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKR

Query:  CSTCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
        CSTCNV VGDA +FREHHKS+WHKHN               C VE+A+GDSESDLKEYSF
Subjt:  CSTCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

SwissProt top hits

e value

%identity

Alignment

P70122 Ribosome maturation protein SBDS

1.4e-59

51.82

Show/hide

Query:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSG          +  V+ NVSKG +AK +DL +AFGTDDQTEIC +IL +GE+QV+ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MRLR+I+P      L +KL      + S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSND

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD
         S  QQ  I+C +DP  +R+ + L+   ++  G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD

Q3SWZ6 Ribosome maturation protein SBDS

7.0e-59

51.82

Show/hide

Query:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSG          +  V+ NVSKG +AK +DL +AFGTDDQTEIC +IL +GE+QV+ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MRLR+I+P      L +KL      I S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSND

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD
            QQ  I+C +DP  +R+ + L+   ++  G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD

Q5RK30 Ribosome maturation protein SBDS

3.1e-59

51.42

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Query:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSG          +  V+ NVSKG +AK +DL +AFGTDDQTEIC +IL +GE+QV+ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MRLR+++P      L +KL      + S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSND

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD
         S  QQ  I+C +DP  +R+ + L+   ++  G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD

Q5ZIY4 Ribosome maturation protein SBDS

4.5e-58

50.6

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Query:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGSQ----------IVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKERE
        S+  P  Q RLTNVAVVR ++ G RFEIACY+NKV+ WRSG++           V+ NVSKG +AK +DL  AFGTDDQTEIC  IL +GELQV+ KER+
Subjt:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGSQ----------IVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L++   I+R+ MRLR+I+P +    L +KL      I + D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSND

Query:  QSGNQQRSIICELDPSFYRDCNPLM-SELHGR--FEVLSFCLHEEGDTNVD
           + Q  I+C +DP  +R+ + L+ SE  G+   EVLS    EEGD  ++
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM-SELHGR--FEVLSFCLHEEGDTNVD

Q9Y3A5 Ribosome maturation protein SBDS

1.3e-57

51.01

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Query:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSG          +  V+ NVSKG +AK +DL +AFGTDDQTEIC +IL +GE+QV+ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V  N S+K+QALEVI +L+++  I+R+ MRLR+I+P      L +KL      I S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSND

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD
            QQ  I+C +DP  +R+ + L+   ++  G  EVL+    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD

Arabidopsis top hits

e value

%identity

Alignment

AT1G43860.1 sequence-specific DNA binding transcription factors

3.9e-113

57.95

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Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK
        MS++LVQP+GQKRLTNVAVVRLKK G RFEIACYKNKVLSWRSG          S  VYSNVSKGVLAK+KDL  +FG+DD T+IC+ IL++GELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSG----------SQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        ERE+Q S+QFRDIATIVMQKT NPET+RPYTISM+ERLM EIHFAVDP+ +SKKQAL+VI ELQK FPIKRSPMRLR  VP QN PSLL+KL  W  S+V
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYE-----NVELLP--RQLKETESSIPQLSEALQKQTISVNSD--
        S D+SG Q  S +CE++P  +R+C+  +  + GR E+L+  +H EGDT++D Y++  +     +  LLP   + K+    + +LS+ LQKQ IS   +  
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYE-----NVELLP--RQLKETESSIPQLSEALQKQTISVNSD--

Query:  ---NAPKEGKRCSTCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF
              K+G +CSTCN  VG+A ++REH KSDWHKHN               C  E+ M DS +DLK+YSF
Subjt:  ---NAPKEGKRCSTCNVAVGDATKFREHHKSDWHKHN---------------CTVELAMGDSESDLKEYSF

Sequences

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CDS sequence

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ATGTCCCGATCGCTGGTGCAGCCTATCGGGCAGAAGCGGCTGACCAACGTCGCCGTGGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAA
GGTCCTTTCATGGCGCTCTGGCTCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAAGATTTGAAAGCAGCTTTTGGTACAGATGATCAGACGG
AAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAG
ACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTAATGCGTGAAATTCATTTTGCTGTCGATCCAAATCACAGCTCAAAGAAACAGGCACT
AGAGGTTATTCATGAGCTTCAGAAACAATTCCCAATTAAACGGTCACCTATGAGGTTACGATATATTGTACCTGAACAGAACGTCCCTTCTCTTCTTGATAAGTTAAATG
CTTGGAGTGCTAGTATTGTTTCCAATGACCAGTCTGGAAATCAGCAACGAAGCATAATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGCAATCCACTAATGAGTGAA
CTACATGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGAGACACCAATGTGGATCAATACGAGGACGATTATGAGAATGTGGAACTGCTACCAAGGCAATT
AAAGGAAACAGAATCGTCTATTCCTCAGCTAAGTGAAGCTTTACAAAAGCAGACAATTTCTGTCAACAGTGATAACGCCCCAAAGGAAGGAAAACGCTGCAGCACATGCA
ACGTAGCCGTGGGAGATGCTACAAAGTTTAGAGAGCATCACAAGAGTGATTGGCATAAGCATAATTGCACGGTAGAATTGGCAATGGGTGATTCAGAGTCTGACCTGAAG
GAGTATTCATTTTGA

mRNA sequence

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Protein sequence

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MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGSQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK
TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFYRDCNPLMSE
LHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRCSTCNVAVGDATKFREHHKSDWHKHNCTVELAMGDSESDLK
EYSF

IVF0005569 (gene) of Melon (IVF77) v1 genome