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IVF0005645 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005645
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr02:10537261..10537590
RNA-Seq ExpressionIVF0005645
SyntenyIVF0005645
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032024.1 Integrase, catalytic core [Cucumis melo var. makuwa]1.34e-3363.55Show/hide
Query:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT
        VV+ E+S SLLA F+VRSSLV EIVR   E S LQK LG SK+G + +F+LR+DG IVKQ RL VP+  ELK+AI  E +SS YA+ P STKMYRT+KKT
Subjt:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT

Query:  YYWPRIK
        Y+WPR+K
Subjt:  YYWPRIK

KAA0037903.1 hypothetical protein E6C27_scaffold36G00750 [Cucumis melo var. makuwa]4.03e-3265.42Show/hide
Query:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT
        VV++E+S SLLA FQVRSSLVAEIVR   E S LQK  GKSK+G + +F+LR DG IVKQ RL VP++ ELK+AI  E +SS YA+ PGSTKMYRT+KK 
Subjt:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT

Query:  YYWPRIK
        Y+WP IK
Subjt:  YYWPRIK

KAA0038394.1 Chromo domain-containing protein [Cucumis melo var. makuwa]1.34e-6398.17Show/hide
Query:  MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMK
        MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYAL PGSTKMYRT K
Subjt:  MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMK

Query:  KTYYWPRIK
        KTYYWPRIK
Subjt:  KTYYWPRIK

KAA0056683.1 polyprotein [Cucumis melo var. makuwa]6.28e-3261.68Show/hide
Query:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT
        VV+ E+S SLLA FQVRSSLV EIVR   E S LQK   KSK+  + +F+LR DG IVKQ RL VP++ ELK+AI  E +SS YA+ PGSTKMYRT+KKT
Subjt:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT

Query:  YYWPRIK
        Y+W  +K
Subjt:  YYWPRIK

TYJ97001.1 Chromo domain-containing protein [Cucumis melo var. makuwa]2.85e-65100Show/hide
Query:  MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMK
        MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMK
Subjt:  MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMK

Query:  KTYYWPRIK
        KTYYWPRIK
Subjt:  KTYYWPRIK

TrEMBL top hitse value%identityAlignment
A0A5A7T4K5 Chromo domain-containing protein1.3e-4998.17Show/hide
Query:  MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMK
        MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYAL PGSTKMYRT K
Subjt:  MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMK

Query:  KTYYWPRIK
        KTYYWPRIK
Subjt:  KTYYWPRIK

A0A5A7UJV1 DNA/RNA polymerases superfamily protein6.9e-2764.49Show/hide
Query:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT
        V++ E+S SLLA FQVRSSLVAEIV    E S LQK L K+KQG +A+FQLR DG IVKQ RL VP++ ELK AI  E ++S YA+ PGSTKMYRT+KKT
Subjt:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT

Query:  YYWPRIK
        Y+WP +K
Subjt:  YYWPRIK

A0A5D3BEC0 Chromo domain-containing protein6.9e-51100Show/hide
Query:  MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMK
        MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMK
Subjt:  MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMK

Query:  KTYYWPRIK
        KTYYWPRIK
Subjt:  KTYYWPRIK

A0A5D3BHR4 Reverse transcriptase domain-containing protein8.2e-2865.42Show/hide
Query:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT
        VV++E+S SLLA FQVRSSLVAEIVR   E S LQK  GKSK+G + +F+LR DG IVKQ RL VP++ ELK+AI  E +SS YA+ PGSTKMYRT+KK 
Subjt:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT

Query:  YYWPRIK
        Y+WP IK
Subjt:  YYWPRIK

A0A5D3E0T4 CCHC-type domain-containing protein3.1e-2761.68Show/hide
Query:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT
        VV++E+S SLLA FQVRSSLV EIVR  LE S LQK LGKSK+G + +F++R+DG IVKQ RL V ++ ELK+AI +E +S  YA+ PG+TKMY+T+KKT
Subjt:  VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKT

Query:  YYWPRIK
        Y+WP +K
Subjt:  YYWPRIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTTGTGAGTGTAGAGAATTCAACGAGCTTGTTAGCTTCATTTCAGGTTAGGTCTTCCCTAGTAGCTGAGATTGTTAGAATGCATTTAGAGCACAGTCAACTTCA
GAAAGGGCTTGGAAAGTCCAAGCAAGGCCAAAAAGCCAAGTTTCAGTTGAGATTAGATGGAACCATAGTTAAGCAAGACAGACTATATGTTCCAAGTGTTAGAGAGTTGA
AGGATGCTATCTTTAGAGAAGGTTACAGTTCAGTATATGCTCTACGTCCAGGCAGTACCAAGATGTATAGGACCATGAAGAAAACATACTACTGGCCTAGAATAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGTTGTGAGTGTAGAGAATTCAACGAGCTTGTTAGCTTCATTTCAGGTTAGGTCTTCCCTAGTAGCTGAGATTGTTAGAATGCATTTAGAGCACAGTCAACTTCA
GAAAGGGCTTGGAAAGTCCAAGCAAGGCCAAAAAGCCAAGTTTCAGTTGAGATTAGATGGAACCATAGTTAAGCAAGACAGACTATATGTTCCAAGTGTTAGAGAGTTGA
AGGATGCTATCTTTAGAGAAGGTTACAGTTCAGTATATGCTCTACGTCCAGGCAGTACCAAGATGTATAGGACCATGAAGAAAACATACTACTGGCCTAGAATAAAGTGA
Protein sequenceShow/hide protein sequence
MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWPRIK