CuGenDBv2

Gene ID	IVF0005784
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Genome location	chr11:6789185..6796574
RNA-Seq Expression	IVF0005784
Synteny	IVF0005784
Gene Ontology terms	GO:0006120 - mitochondrial electron transport, NADH to ubiquinone (biological process) GO:0005747 - mitochondrial respiratory chain complex I (cellular component)
InterPro domains	IPR019401 - Zinc finger, CHCC-type

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004151845.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucumis sativus]

1.31e-66

97.09

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
        MASSLFK+LLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKV GRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQ 
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD

Query:  HHH
        HHH
Subjt:  HHH

XP_008462784.1 PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucumis melo]

4.74e-69

100

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
        MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD

Query:  HHH
        HHH
Subjt:  HHH

XP_022943963.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita moschata]

2.54e-64

93.2

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
        MASSLFK L+ESSS IPSS R+LSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNP LGHPIEFICLDREEPAVCKYCGLRYTQD
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD

Query:  HHH
        HHH
Subjt:  HHH

XP_023511819.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like [Cucurbita pepo subsp. pepo]

6.24e-65

94.17

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
        MASSLFK L+ESSS IPSS R+LSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD

Query:  HHH
        HHH
Subjt:  HHH

XP_038900460.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Benincasa hispida]

1.08e-65

95.15

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
        MASSLFK L+ESSS IPSS RNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGD+NPALGHPIEFICLDREEPAVCKYCGLRYTQD
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD

Query:  HHH
        HHH
Subjt:  HHH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNG2 zf-CHCC domain-containing protein

1.4e-50

97.09

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
        MASSLFK+LLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKV GRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQ 
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD

Query:  HHH
        HHH
Subjt:  HHH

A0A1S3CI88 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

2.0e-52

100

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
        MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD

Query:  HHH
        HHH
Subjt:  HHH

A0A6J1D4A8 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

8.0e-49

91.26

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
        MAS+LFK ++ESSS  PSS RNLSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRI+ACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD

Query:  HHH
        HHH
Subjt:  HHH

A0A6J1FXJ3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

8.0e-49

93.2

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
        MASSLFK L+ESSS IPSS R+LSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNP LGHPIEFICLDREEPAVCKYCGLRYTQD
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD

Query:  HHH
        HHH
Subjt:  HHH

A0A6J1JEL4 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

1.0e-48

93.2

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
        MASSLFK L+ESSS  PSS R+LSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQD

Query:  HHH
        HHH
Subjt:  HHH

SwissProt top hits

e value

%identity

Alignment

Q9M9M6 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

5.5e-39

70.27

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQ--------IGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKY
        MAS+L K L+ S   +PSS RN S+   Q        +G HTAKWMQD SKKSPMELI+EVPPIKV+GRIVACEGD+NPALGHPIEFICLD  EPA+CKY
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQ--------IGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKY

Query:  CGLRYTQDHHH
        CGLRY QDHHH
Subjt:  CGLRYTQDHHH

Arabidopsis top hits

e value

%identity

Alignment

AT3G03070.1 NADH-ubiquinone oxidoreductase-related

3.9e-40

70.27

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Query:  MASSLFKLLLESSSNIPSSTRNLSLVANQ--------IGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKY
        MAS+L K L+ S   +PSS RN S+   Q        +G HTAKWMQD SKKSPMELI+EVPPIKV+GRIVACEGD+NPALGHPIEFICLD  EPA+CKY
Subjt:  MASSLFKLLLESSSNIPSSTRNLSLVANQ--------IGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKY

Query:  CGLRYTQDHHH
        CGLRY QDHHH
Subjt:  CGLRYTQDHHH

Sequences

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CDS sequence

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ATGGCGTCAAGTCTGTTCAAATTGCTTCTTGAATCTTCTTCTAATATCCCATCTTCTACTAGAAATCTGAGTCTTGTTGCCAATCAAATCGGCCAGCACACCGCCAAATG
GATGCAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTTGAAGGCCGCATCGTTGCTTGTGAAGGAGACAGCAATCCTGCCCTTG
GACATCCAATTGAGTTCATATGCCTCGATCGGGAAGAGCCCGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGACCATCACCACTAG

mRNA sequence

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CTTTCAAAAAAAAAAAAAGGTCACATCCGTGGTTTTTACTTTAAGCTCCCCGGGCCGTAGCTCTTCGCGCTCTCTCTTTCTCTCTCAGCTCAGGTTGTGCGTTTGATCGG
TGGATCAATGGCGTCAAGTCTGTTCAAATTGCTTCTTGAATCTTCTTCTAATATCCCATCTTCTACTAGAAATCTGAGTCTTGTTGCCAATCAAATCGGCCAGCACACCG
CCAAATGGATGCAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAATGAGGTTCCACCAATCAAGGTTGAAGGCCGCATCGTTGCTTGTGAAGGAGACAGCAATCCT
GCCCTTGGACATCCAATTGAGTTCATATGCCTCGATCGGGAAGAGCCCGCTGTGTGCAAGTACTGTGGCCTGCGCTATACTCAGGACCATCACCACTAGAAAATGTGCAA
ATGATTATTCCAGCAAGCAACCCGGAACTTAAAGTCTATTGTACCTTTCTAAACTCGACTTCTGTAATGGTTTATACTATTGGCTGCATAAATTAGGAATTTAAGAATTC
CATTCACTAAGCACTTTGGACGGGTCCATTGTCTTTTGCCAAATCTGTTCTATTGCTCTGTCTAGTGAACATATCTTGTTGATTCTAATACACAATAAAAGGTTTTTGAT
CTCTTGGGAGTTGCAACCTTGAAATGGGATTTTTTATGGATCGCGCTTTTTAAGGTCGCAAATGGAATTTGGCGC

Protein sequence

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MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH

IVF0005784 (gene) of Melon (IVF77) v1 genome