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IVF0005808 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005808
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:2732069..2733538
RNA-Seq ExpressionIVF0005808
SyntenyIVF0005808
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025375.1 zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa]3.09e-7769.67Show/hide
Query:  IFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI-------------SEKIVVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDF
        + S++LQPR SS    QICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI             +EKIVVLKYVAAEKI+VSNMLQPRRSS +ICCSQKDF
Subjt:  IFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI-------------SEKIVVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDF

Query:  YLKYIVAENVVVS--CNPE-----------SRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIAAEDVVVSNMLL
         LKYIVAE VVVS    P             R L Y+AAE +VV        LKYV  EKIVVSNMLQPKRFLSQVYCSRESRRLIY+AAEDVV+SNML 
Subjt:  YLKYIVAENVVVS--CNPE-----------SRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIAAEDVVVSNMLL

Query:  SRRSSLQICCS
        SRRSS QICCS
Subjt:  SRRSSLQICCS

KAA0032450.1 hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa]1.47e-6049.65Show/hide
Query:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKD--------------------------------FC------LKYIVAEKVVVSYILQPR
        MLQTRIFP V  KRIFIFIFSHVLQ R  SSSSS + CS++D                                +C      L+Y+  EK +VSYILQPR
Subjt:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKD--------------------------------FC------LKYIVAEKVVVSYILQPR

Query:  MSSSQIS-------------EKIVVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFYLKYIVAENVVVS------------C-NPESRRLIYIAAEDVVV
        MSSSQI              EKI VLKYVAAEKIIVSNMLQPRRSSSQICCSQKDF  +YI+AE VVVS            C   E R L Y+AAE + V
Subjt:  MSSSQIS-------------EKIVVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFYLKYIVAENVVVS------------C-NPESRRLIYIAAEDVVV

Query:  SNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIAAEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIIIF
                LKYV  EKI+VSNMLQP+R  SQ+ CS++   L YI  E VVVS ML  R S  +ICC  E       L+ VA ++II+F
Subjt:  SNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIAAEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIIIF

KAA0046208.1 hypothetical protein E6C27_scaffold8039G00010 [Cucumis melo var. makuwa]1.78e-7056.11Show/hide
Query:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI-------------SEKIVVLKYVAAEKIIVSN
        MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI             SEKIV LKYVAAEKI+   
Subjt:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI-------------SEKIVVLKYVAAEKIIVSN

Query:  MLQPRRSSSQICCSQKDFYLKYIVAENVVV-----------------SCNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYC
           PR SSSQICC +    LKY+ AE +VV                  C  E   L Y+AAE +VV        LKYV  EKI+VSNMLQP+R  SQ+ C
Subjt:  MLQPRRSSSQICCSQKDFYLKYIVAENVVV-----------------SCNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYC

Query:  SRESRRLIYIAAED---------VVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII
        S++   L YI AE+         VVVS +L  R S  QICC          L+ VA E+I++
Subjt:  SRESRRLIYIAAED---------VVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]6.01e-7561.57Show/hide
Query:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQIS------EKIVVLKYVAAEKIIVSNMLQPRRS
        MLQT IFP V  KRIFIFIFSH   PRGSSSSSSQICCSQKD  LKYIVAE VVVS +LQPRMSSS+I       EKI VLKYVAAEKIIVSNMLQPRRS
Subjt:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQIS------EKIVVLKYVAAEKIIVSNMLQPRRS

Query:  SSQICCSQKDFYLKYIVAENVVVS-------------CNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIA
        SSQICCSQKDF LKYIVAE VVVS             C  E R L Y+A E ++V        LKYV  EKI+VSNMLQP+R  SQ+ CS++   L YI 
Subjt:  SSQICCSQKDFYLKYIVAENVVVS-------------CNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIA

Query:  AEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII
        AE VVVS ML  RRSS QIC   +D      L+ +  E++++
Subjt:  AEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.95e-7161.57Show/hide
Query:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQIS------EKIVVLKYVAAEKIIVSNMLQPRRS
        MLQT IFP V  KRIFIFIFSH   PRGSSSSSSQICCSQKD  LKYIVAE VVVS +LQPRMSSS+I       EKI VLKYVAAEKIIVSNMLQPRRS
Subjt:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQIS------EKIVVLKYVAAEKIIVSNMLQPRRS

Query:  SSQICCSQKDFYLKYIVAENVVVS-------------CNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIA
        SSQICCSQKDF LKYIVAE VVVS             C  E R L Y+A E ++V        LKYV  EKI+VSNMLQP+R  SQ+ CS++   L YI 
Subjt:  SSQICCSQKDFYLKYIVAENVVVS-------------CNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIA

Query:  AEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII
        AE VVVS ML  RRSS QIC   +D      L+ +  E++++
Subjt:  AEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII

TrEMBL top hitse value%identityAlignment
A0A5A7SLN4 Zinc finger Y-chromosomal protein 1-like isoform X13.1e-6169.67Show/hide
Query:  IFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI-------------SEKIVVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDF
        + S++LQPR    SS QICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI             +EKIVVLKYVAAEKI+VSNMLQPRRSS +ICCSQKDF
Subjt:  IFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI-------------SEKIVVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDF

Query:  YLKYIVAENVVVS--CNPE-----------SRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIAAEDVVVSNMLL
         LKYIVAE VVVS    P             R L Y+AAE +VV        LKYV  EKIVVSNMLQPKRFLSQVYCSRESRRLIY+AAEDVV+SNML 
Subjt:  YLKYIVAENVVVS--CNPE-----------SRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIAAEDVVVSNMLL

Query:  SRRSSLQICCS
        SRRSS QICCS
Subjt:  SRRSSLQICCS

A0A5A7SNS6 Uncharacterized protein1.8e-4849.31Show/hide
Query:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKD--------------------------------FC------LKYIVAEKVVVSYILQPR
        MLQTRIFP V  KRIFIFIFSHVLQ R  SSSSS + CS++D                                +C      L+Y+  EK +VSYILQPR
Subjt:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKD--------------------------------FC------LKYIVAEKVVVSYILQPR

Query:  MSSSQIS-------------EKIVVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFYLKYIVAENVVVS-------------CNPESRRLIYIAAEDVVV
        MSSSQI              EKI VLKYVAAEKIIVSNMLQPRRSSSQICCSQKDF  +YI+AE VVVS                E R L Y+AAE + V
Subjt:  MSSSQIS-------------EKIVVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFYLKYIVAENVVVS-------------CNPESRRLIYIAAEDVVV

Query:  SNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIAAEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIIIF
                LKYV  EKI+VSNMLQP+R  SQ+ CS++   L YI  E VVVS ML  R S  +ICC  E       L+ VA ++II+F
Subjt:  SNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIAAEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIIIF

A0A5A7TTL9 Uncharacterized protein1.5e-5556.11Show/hide
Query:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI-------------SEKIVVLKYVAAEKIIVSN
        MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI             SEKIV LKYVAAEKI+   
Subjt:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI-------------SEKIVVLKYVAAEKIIVSN

Query:  MLQPRRSSSQICCSQKDFYLKYIVAENVVV-----------------SCNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYC
           PR SSSQICC +    LKY+ AE +VV                  C  E   L Y+AAE +VV        LKYV  EKI+VSNMLQP+R  SQ+ C
Subjt:  MLQPRRSSSQICCSQKDFYLKYIVAENVVV-----------------SCNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYC

Query:  SRESRRLIYIAAED---------VVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII
        S++   L YI AE+         VVVS +L  R S  QICC          L+ VA E+I++
Subjt:  SRESRRLIYIAAED---------VVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII

A0A5A7UEK9 Uncharacterized protein4.5e-6061.57Show/hide
Query:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI------SEKIVVLKYVAAEKIIVSNMLQPRRS
        MLQT IFP V  KRIFIFIFSH   PRGSSSSSSQICCSQKD  LKYIVAE VVVS +LQPRMSSS+I       EKI VLKYVAAEKIIVSNMLQPRRS
Subjt:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI------SEKIVVLKYVAAEKIIVSNMLQPRRS

Query:  SSQICCSQKDFYLKYIVAENVVVS-------------CNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIA
        SSQICCSQKDF LKYIVAE VVVS             C  E R L Y+A E ++V        LKYV  EKI+VSNMLQP+R  SQ+ CS++   L YI 
Subjt:  SSQICCSQKDFYLKYIVAENVVVS-------------CNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIA

Query:  AEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII
        AE VVVS ML  RRSS QIC   +D      L+ +  E++++
Subjt:  AEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII

A0A5D3C2C8 Retrotransposon gag protein4.5e-6061.57Show/hide
Query:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI------SEKIVVLKYVAAEKIIVSNMLQPRRS
        MLQT IFP V  KRIFIFIFSH   PRGSSSSSSQICCSQKD  LKYIVAE VVVS +LQPRMSSS+I       EKI VLKYVAAEKIIVSNMLQPRRS
Subjt:  MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQI------SEKIVVLKYVAAEKIIVSNMLQPRRS

Query:  SSQICCSQKDFYLKYIVAENVVVS-------------CNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIA
        SSQICCSQKDF LKYIVAE VVVS             C  E R L Y+A E ++V        LKYV  EKI+VSNMLQP+R  SQ+ CS++   L YI 
Subjt:  SSQICCSQKDFYLKYIVAENVVVS-------------CNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIA

Query:  AEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII
        AE VVVS ML  RRSS QIC   +D      L+ +  E++++
Subjt:  AEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATERIII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGACAAGGATCTTTCCATGTGTTGTGCCCAAGAGGATCTTCATCTTCATCTTCTCCCATGTGTTGCAGCCGAGAGGATCTTCATCTTCATCATCTCAAATATG
TTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATCTGAGAAGATTGTTG
TTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCTCAAATATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTATCTCAAGTATATT
GTAGCTGAGAATGTCGTTGTCTCGTGCAACCCAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTTGTCTCAAATATCAGAGAAGATCATCGTCTCAAATA
TGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGG
ATGTCGTCGTCTCAAATATGTTGCTGTCGAGAAGGTCGTCCCTTCAAATATGTTGCAGCTGGGAGGATCTTCACCATCATCATCATCTTCAATGTGTTGCAACAGAGAGG
ATCATCATCTTCATCTTCAATGTGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGACAAGGATCTTTCCATGTGTTGTGCCCAAGAGGATCTTCATCTTCATCTTCTCCCATGTGTTGCAGCCGAGAGGATCTTCATCTTCATCATCTCAAATATG
TTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATCTGAGAAGATTGTTG
TTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCTCAAATATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTATCTCAAGTATATT
GTAGCTGAGAATGTCGTTGTCTCGTGCAACCCAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTTGTCTCAAATATCAGAGAAGATCATCGTCTCAAATA
TGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGG
ATGTCGTCGTCTCAAATATGTTGCTGTCGAGAAGGTCGTCCCTTCAAATATGTTGCAGCTGGGAGGATCTTCACCATCATCATCATCTTCAATGTGTTGCAACAGAGAGG
ATCATCATCTTCATCTTCAATGTGTTGTAG
Protein sequenceShow/hide protein sequence
MLQTRIFPCVVPKRIFIFIFSHVLQPRGSSSSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQISEKIVVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFYLKYI
VAENVVVSCNPESRRLIYIAAEDVVVSNIREDHRLKYVTTEKIVVSNMLQPKRFLSQVYCSRESRRLIYIAAEDVVVSNMLLSRRSSLQICCSWEDLHHHHHLQCVATER
IIIFIFNVL