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IVF0005814 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005814
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:4333178..4333345
RNA-Seq ExpressionIVF0005814
SyntenyIVF0005814
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054051.1 retrotransposon protein [Cucumis melo var. makuwa]8.25e-2681.82Show/hide
Query:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
        MT C+DIDDVDEGDSAYATTT  +DI YI+TTNEWSQWRDELA++MFT+WQLRNA
Subjt:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
KAA0056734.1 retrotransposon protein [Cucumis melo var. makuwa]2.16e-28100Show/hide
Query:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQL
        MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQL
Subjt:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQL
KAA0058871.1 retrotransposon protein [Cucumis melo var. makuwa]3.98e-2478.18Show/hide
Query:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
        MT CED+DD DEGDS Y TTT  +DIQYI+TTNEWSQWRD+LA++MFTEWQLRNA
Subjt:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
KAA0062284.1 retrotransposon protein [Cucumis melo var. makuwa]1.97e-2480Show/hide
Query:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
        MT C+DIDD DEGDS YATTT  +DIQYI+TTNEWSQWRD+LA++MFTEWQLRNA
Subjt:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
TYJ97711.1 retrotransposon protein [Cucumis melo var. makuwa]3.94e-2480Show/hide
Query:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
        MTNC+DID+V+E DSAYATTT  +DIQYI TT EWS WRDELA+AMFTEWQLRNA
Subjt:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
TrEMBL top hitse value%identityAlignment
A0A5A7SZH3 Retrotransposon protein1.9e-1778.18Show/hide
Query:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
        MT CED+DD D+GDS YATTT  +DIQYI+TTNEWSQWRD+LA++MFTEWQLRNA
Subjt:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
A0A5A7U3B3 Retrotransposon protein1.9e-1778.18Show/hide
Query:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
        MT CED+DDVDEGDS YAT T  +DIQYI+TTNEWSQWRD+LA++MFT+WQLRNA
Subjt:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
A0A5A7UNF3 Retrotransposon protein7.5e-22100Show/hide
Query:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQL
        MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQL
Subjt:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQL
A0A5A7V4Q8 Retrotransposon protein1.5e-1780Show/hide
Query:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
        MT C+DIDD DEGDS YATTT  +DIQYI+TTNEWSQWRD+LA++MFTEWQLRNA
Subjt:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
A0A5D3BDZ0 Retrotransposon protein3.9e-1881.82Show/hide
Query:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
        MT C+DIDDVDEGDSAYATTT  +DI YI+TTNEWSQWRDELA++MFT+WQLRNA
Subjt:  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAATTGCGAAGACATTGACGATGTGGACGAGGGGGACTCCGCATACGCCACGACCACCACACCAAAAGACATTCAGTACATTAAGACCACAAACGAGTGGTCTCA
GTGGCGTGATGAATTAGCTAAAGCAATGTTCACTGAATGGCAGTTGCGTAACGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAATTGCGAAGACATTGACGATGTGGACGAGGGGGACTCCGCATACGCCACGACCACCACACCAAAAGACATTCAGTACATTAAGACCACAAACGAGTGGTCTCA
GTGGCGTGATGAATTAGCTAAAGCAATGTTCACTGAATGGCAGTTGCGTAACGCTTAG
Protein sequenceShow/hide protein sequence
MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEWQLRNA