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IVF0005831 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005831
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPMD domain-containing protein
Genome locationchr12:13366705..13367211
RNA-Seq ExpressionIVF0005831
SyntenyIVF0005831
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035658.1 hypothetical protein E6C27_scaffold285G003540 [Cucumis melo var. makuwa]3.10e-86100Show/hide
Query:  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSP
        MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSP
Subjt:  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSP

Query:  LNAHLEGLIELGSDESLTGPHAIDSTIEEV
        LNAHLEGLIELGSDESLTGPHAIDSTIEEV
Subjt:  LNAHLEGLIELGSDESLTGPHAIDSTIEEV

KAA0052877.1 hypothetical protein E6C27_scaffold1184G00090 [Cucumis melo var. makuwa]8.79e-6578.1Show/hide
Query:  YFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLSPLNA
        YFE+N+HHLVSS+IP  SQ KL KN+G+NLGGKEIRLVEA+A TLEEEI EHKD+SD SKSDRHWKRPL K KVS DDLD +G     VP+VSPLSPLNA
Subjt:  YFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLSPLNA

Query:  HLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKP
        H +GLIELGSDESL GP+A+DSTIEEVGTSKTPASKP
Subjt:  HLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKP

KAA0054388.1 hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa]1.21e-6678.47Show/hide
Query:  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPL
        MR GTYFEDN HHLVSS IP  SQPKL KN+G+NLGGKEIRLVE MA TL+EEI EHKDESDSSKSDRHWKRPL KAKVSGDD D RG     VPNV PL
Subjt:  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPL

Query:  SPLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE
        SPLNAHLEGL+EL SD+SLTGP+A+DSTIE VGT KT  SKP E
Subjt:  SPLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE

KAA0062878.1 hypothetical protein E6C27_scaffold4427G00080 [Cucumis melo var. makuwa]2.19e-6476.92Show/hide
Query:  RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLS
        R  TYFEDN HHLVSSIIP  SQPKL KNQG+NL GKEI LVEAMA TLE+E+ EHKDESDSSKSDRHWKRPL KAKVSGDD D  G     VP+V PLS
Subjt:  RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLS

Query:  PLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE
        PLN HLEGLIEL SDE LTGPHA++ST EEVGTSKTP +KP E
Subjt:  PLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE

TYK22511.1 hypothetical protein E5676_scaffold387G00090 [Cucumis melo var. makuwa]2.19e-6476.92Show/hide
Query:  RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLS
        R  TYFEDN HHLVSSIIP  SQPKL KNQG+NL GKEI LVEAMA TLE+E+ EHKDESDSSKSDRHWKRPL KAKVSGDD D  G     VP+V PLS
Subjt:  RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLS

Query:  PLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE
        PLN HLEGLIEL SDE LTGPHA++ST EEVGTSKTP +KP E
Subjt:  PLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE

TrEMBL top hitse value%identityAlignment
A0A5A7SQC9 PMD domain-containing protein9.6e-5376.92Show/hide
Query:  RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRG--PREVPNVSPLS
        + GTYFEDN+HHLVSS+IP  SQP+L KN+G+NLGGKEIRLVEAMA  LEEE+ EHKDESDSSKSDRHWKRPL KAKVSGD  D RG    EVP+V PLS
Subjt:  RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRG--PREVPNVSPLS

Query:  PLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE
        PLN HLEGLIE  SDESLTGPHA+DS  EEVGTS+TP +KPTE
Subjt:  PLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE

A0A5A7TX42 Uncharacterized protein1.8e-5176.22Show/hide
Query:  RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRG--PREVPNVSPLS
        + GTYFEDN+HHLVSS IP  SQP+L KN+G+NLGGKEIRLVEAMA  LEEE+ E KDESDSSKSDRHWKRPL KAKVSGD  D RG    EVP+V PLS
Subjt:  RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRG--PREVPNVSPLS

Query:  PLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE
        PLN HLEGLIE  SDESLTGPHA+DS  EEVGTS+TP +KPTE
Subjt:  PLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE

A0A5A7UVX0 PMD domain-containing protein1.4e-5176.39Show/hide
Query:  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPL
        MR  TYFE+N+HHLVSS IP  SQP+L KN+G+NLGGKEIRLVEAMA  LEEE+NEHKDESDSSKSDRHWKRPL KAKVSGD+ D RG     VP+V PL
Subjt:  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPL

Query:  SPLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE
        SPLN HLEGLI L SDESL GPHA+DS  EEVGTSKTP +KPTE
Subjt:  SPLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE

A0A5D3BCT1 Uncharacterized protein9.6e-5378.47Show/hide
Query:  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPL
        MR GTYFEDN HHLVSS IP  SQPKL KN+G+NLGGKEIRLVE MA TL+EEI EHKDESDSSKSDRHWKRPL KAKVSGDD D RG     VPNV PL
Subjt:  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPL

Query:  SPLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE
        SPLNAHLEGL+EL SD+SLTGP+A+DSTIE VGT KT  SKP E
Subjt:  SPLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE

A0A5D3E6F4 Uncharacterized protein5.8e-66100Show/hide
Query:  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSP
        MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSP
Subjt:  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSP

Query:  LNAHLEGLIELGSDESLTGPHAIDSTIEEV
        LNAHLEGLIELGSDESLTGPHAIDSTIEEV
Subjt:  LNAHLEGLIELGSDESLTGPHAIDSTIEEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAGGGGACGTATTTTGAGGATAACAAACATCATTTGGTGAGTAGTATCATTCCTTCCCTTTCACAGCCCAAACTACTCAAGAACCAAGGGAACAACTTAGGTGG
TAAAGAAATTCGCTTGGTTGAGGCGATGGCTACTACTCTTGAGGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTT
TGAATAAAGCGAAGGTATCAGGTGATGATCTCGACAGAAGGGGTCCAAGGGAAGTCCCTAATGTTTCACCACTGTCACCTTTGAACGCTCATCTTGAAGGCCTTATAGAG
CTAGGCAGCGATGAATCTTTGACGGGACCTCATGCAATTGATTCTACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAACCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAGGGGACGTATTTTGAGGATAACAAACATCATTTGGTGAGTAGTATCATTCCTTCCCTTTCACAGCCCAAACTACTCAAGAACCAAGGGAACAACTTAGGTGG
TAAAGAAATTCGCTTGGTTGAGGCGATGGCTACTACTCTTGAGGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTT
TGAATAAAGCGAAGGTATCAGGTGATGATCTCGACAGAAGGGGTCCAAGGGAAGTCCCTAATGTTTCACCACTGTCACCTTTGAACGCTCATCTTGAAGGCCTTATAGAG
CTAGGCAGCGATGAATCTTTGACGGGACCTCATGCAATTGATTCTACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAACCGAATAG
Protein sequenceShow/hide protein sequence
MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIE
LGSDESLTGPHAIDSTIEEVGTSKTPASKPTE