CuGenDBv2

Gene ID	IVF0005832
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Beta-galactosidase
Genome location	chr03:2373874..2374140
RNA-Seq Expression	IVF0005832
Synteny	IVF0005832
Gene Ontology terms	GO:0000723 - telomere maintenance (biological process) GO:0006303 - double-strand break repair via nonhomologous end joining (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0016310 - phosphorylation (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0043564 - Ku70:Ku80 complex (cellular component) GO:0003678 - DNA helicase activity (molecular function) GO:0003684 - damaged DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0005525 - GTP binding (molecular function) GO:0016301 - kinase activity (molecular function) GO:0016787 - hydrolase activity (molecular function) GO:0042162 - telomeric DNA binding (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036969.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.24e-36

69.41

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Query:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
        S+  +FSG+KLNG NYFSWSQS+KM LEGRH+FGF+  E  RPPP D  ER WK EDS++RS+LIN MEPQIGKP+L+AATAKD+
Subjt:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

KAA0041479.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa]

7.32e-58

100

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Query:  MAQSTAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
        MAQSTAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
Subjt:  MAQSTAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

KAA0067418.1 tRNA modification GTPase MnmE [Cucumis melo var. makuwa]

2.00e-35

81.01

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Query:  SGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
        SG KLN NNYFSWSQSVKMVLEGRHKF F+ GEI RPPP DPQERYWK ED +LRS LIN MEPQIGKPL + ATAKDI
Subjt:  SGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

TYK30078.1 putative mitochondrial protein [Cucumis melo var. makuwa]

4.84e-35

70.59

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Query:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
        S+  +FSG+KLNG NYFSWSQS+KM LEGR++FGF+ GEI RPPP D  ER WK EDS++RS+LIN MEPQIGKPLL+A TAKD+
Subjt:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

TYK31681.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa]

2.17e-36

69.41

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Query:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
        S+  +FSG+KLNG NYFSWSQS+KM LEGR++FGF+ GE  RPPP D  ER WK EDS++RS+LIN MEPQIG PLL+AATAKD+
Subjt:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SM64 Beta-galactosidase

2.3e-28

70.59

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Query:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
        S+  +FSG+KLNG NYFSWSQS+KM LEGR++FGF+ GEI RPPP D  ER WK EDS++RS+LIN MEPQIGKPLL+A TAKD+
Subjt:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

A0A5A7TJD7 UBN2_3 domain-containing protein

3.9e-44

100

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Query:  MAQSTAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
        MAQSTAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
Subjt:  MAQSTAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

A0A5A7VI58 tRNA modification GTPase MnmE

2.7e-29

81.01

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Query:  SGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
        SG KLN NNYFSWSQSVKMVLEGRHKF F+ GEI RPPP DPQERYWK ED +LRS LIN MEPQIGKPL + ATAKDI
Subjt:  SGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

A0A5D3BJK7 Beta-galactosidase

2.3e-28

70.59

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Query:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
        S+  +FSG+KLNG NYFSWSQS+KM LEGR++FGF+ GEI RPPP D  ER WK EDS++RS+LIN MEPQIGKPLL+A TAKD+
Subjt:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

A0A5D3C4T4 Beta-galactosidase

2.3e-28

70.59

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Query:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI
        S+  +FSG+KLNG NYFSWSQS+KM LEGR++FGF+ GEI RPPP D  ER WK EDS++RS+LIN MEPQIGKPLL+A TAKD+
Subjt:  STAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

2.0e-05

30.38

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Query:  FSGDKL--NGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATA
        FS  KL  + +NY +W    +  L    KFGF+ G +P+P P  P  + W+  ++++   L+N M  ++ + +++A TA
Subjt:  FSGDKL--NGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATA

Sequences

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CDS sequence

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ATGGCTCAGTCTACCGCATACCATTTTTCAGGGGACAAGTTGAATGGCAATAACTATTTTTCATGGTCTCAGTCAGTGAAGATGGTCCTTGAAGGACGACATAAATTTGG
CTTTATGATAGGAGAAATACCTCGTCCTCCACCAAGTGACCCACAAGAACGATACTGGAAGGCAGAGGACTCTATTCTTCGATCCATATTGATCAACATTATGGAACCCC
AGATTGGCAAGCCATTATTGTTTGCTGCAACCGCCAAAGATATTTGA

mRNA sequence

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Protein sequence

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MAQSTAYHFSGDKLNGNNYFSWSQSVKMVLEGRHKFGFMIGEIPRPPPSDPQERYWKAEDSILRSILINIMEPQIGKPLLFAATAKDI

IVF0005832 (gene) of Melon (IVF77) v1 genome