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IVF0005836 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005836
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:18342940..18343178
RNA-Seq ExpressionIVF0005836
SyntenyIVF0005836
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045358.1 retrotransposon protein [Cucumis melo var. makuwa]5.28e-2093.33Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTKKT
        MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPST T  T
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTKKT

KAA0051721.1 uncharacterized protein E6C27_scaffold60G001070 [Cucumis melo var. makuwa]2.63e-1965.15Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTKKTVMFRGPHGHISRKYARNFQGN
        MGSQT +D EEDDM+INLEDFDIPNPHGLEPPSGEDMPSTPT    M         RK  R++ G+
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTKKTVMFRGPHGHISRKYARNFQGN

KAA0056667.1 retrotransposon protein [Cucumis melo var. makuwa]1.43e-3782.28Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT-------------KKTVMFRGPHGHISRKYARNFQGN
        MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT             KKTV+FRGPHGHISRKYARNFQGN
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT-------------KKTVMFRGPHGHISRKYARNFQGN

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]4.21e-1993.33Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTKKT
        M SQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT  T
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTKKT

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]6.77e-3782.28Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT-------------KKTVMFRGPHGHISRKYARNFQGN
        MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT             KKTV+FRGPHGHISRKYARNFQGN
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT-------------KKTVMFRGPHGHISRKYARNFQGN

TrEMBL top hitse value%identityAlignment
A0A0A0LY11 Uncharacterized protein4.7e-1865.82Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT-------------KKTVMFRGPHGHISRKYARNFQGN
        MGS + +  EEDDMDINLEDFDIPN HGLEPPS EDM ST T             KKT++FRGPH HIS KYARNFQGN
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT-------------KKTVMFRGPHGHISRKYARNFQGN

A0A1S3CI24 uncharacterized protein At2g29880-like2.5e-2782.28Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT-------------KKTVMFRGPHGHISRKYARNFQGN
        MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT             KKTV+FRGPHGHISRKYARNFQGN
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT-------------KKTVMFRGPHGHISRKYARNFQGN

A0A5A7VG45 Retrotransposon protein1.1e-1497.62Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT
        +GSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT

A0A5D3C2H8 Retrotransposon protein2.5e-2782.28Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT-------------KKTVMFRGPHGHISRKYARNFQGN
        MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT             KKTV+FRGPHGHISRKYARNFQGN
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT-------------KKTVMFRGPHGHISRKYARNFQGN

A0A5D3C7T4 Uncharacterized protein6.3e-1593.33Show/hide
Query:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTKKT
        M SQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT  T
Subjt:  MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTKKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCACAGACTGCAAGAGATACTGAGGAGGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACAT
GCCATCCACTCCAACAAAAAAGACGGTCATGTTTAGGGGACCTCATGGACACATTTCGCGCAAGTATGCAAGAAACTTCCAAGGAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCACAGACTGCAAGAGATACTGAGGAGGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACAT
GCCATCCACTCCAACAAAAAAGACGGTCATGTTTAGGGGACCTCATGGACACATTTCGCGCAAGTATGCAAGAAACTTCCAAGGAAATTAG
Protein sequenceShow/hide protein sequence
MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTKKTVMFRGPHGHISRKYARNFQGN