CuGenDBv2

Gene ID	IVF0005849
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr12:17398465..17398890
RNA-Seq Expression	IVF0005849
Synteny	IVF0005849
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043337.1 retrotransposon protein [Cucumis melo var. makuwa]

2.99e-93

100

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Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER

KAA0053857.1 retrotransposon protein [Cucumis melo var. makuwa]

1.48e-90

93.62

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Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSR S+GRTGSSGSKRKRGSQRDFELEAIH+ALDQTN+QLR+IA+WPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMP DEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER

KAA0065692.1 retrotransposon protein [Cucumis melo var. makuwa]

7.06e-91

95.74

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Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSR SEGRTGSSGSKRKRGSQRDFELEAIHLALDQTN+QLR+IAEWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMP DEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]

1.08e-90

96.45

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Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSR SEGRTGSSGSKRKRGSQRDFELEAIHLALDQTN+QLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMP DEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER

TYK21395.1 retrotransposon protein [Cucumis melo var. makuwa]

5.55e-90

96.45

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Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSR SEGRTGSSGSKRKRGSQRDFELEAIHLALDQTN+QLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMP DEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SRU1 Retrotransposon protein

1.9e-69

96.45

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Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSR SEGRTGSSGSKRKRGSQRDFELEAIHLALDQTN+QLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMP DEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER

A0A5A7TRV1 Retrotransposon protein

4.3e-69

95.74

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Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSR SEGRTGSSGSKRKRGSQRDFELEAIHLALDQTN+QLR+IAEWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMP DEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER

A0A5D3BT72 Retrotransposon protein

1.2e-71

100

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Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER

A0A5D3CHA0 Retrotransposon protein

1.9e-69

96.45

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Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSR SEGRTGSSGSKRKRGSQRDFELEAIHLALDQTN+QLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMP DEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER

A0A5D3DCZ1 Retrotransposon protein

1.9e-69

96.45

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Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSR SEGRTGSSGSKRKRGSQRDFELEAIHLALDQTN+QLRQIAEWPARNLANDNHVRTEFFRILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMP DEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPLDEREGFCRVLLRDIER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGGGATGGAAATGAGGACTTCCCGCCCGTGTACAGCCAGGGAATTGATCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCACTTCAGAGGGTAGGACCGG
ATCAAGTGGATCGAAAAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGACCAACTCAGGCAGATTGCGGAGTGGC
CAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGAGCGTTATTGCAAAGGCATCTT
TTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTCTGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MGDGNEDFPPVYSQGIDLSQDDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHL
LSRMDDLRGFVLMPLDEREGFCRVLLRDIER

IVF0005849 (gene) of Melon (IVF77) v1 genome