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IVF0005857 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005857
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:11472559..11473156
RNA-Seq ExpressionIVF0005857
SyntenyIVF0005857
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036947.1 uncharacterized protein E6C27_scaffold86G00270 [Cucumis melo var. makuwa]4.70e-6170Show/hide
Query:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGE---------------------
        M  E QP LTD+EMTSMF+NTLRAPFY+RMIGNASTN SDIIVIGERIEY IKH RLA+A  EYGGIKKGT+SKKKEGE                     
Subjt:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGE---------------------

Query:  ----GQCSKTNSDTQRFDLIPMTYIELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
            GQ SKTN DT +FD IPMTY ELLPQLIQNRQ+A I MIPIQPPYPKWYDSNARCD
Subjt:  ----GQCSKTNSDTQRFDLIPMTYIELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD

KAA0046903.1 Gag-pro-like protein [Cucumis melo var. makuwa]1.35e-6066.27Show/hide
Query:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGE---------------------
        M  E QP LTD+EMTSMFMNTLRAPFY+RMIGNASTN SDIIVIGERIEY IKH RLA+A  EYGGIKKGT+SK KEGE                     
Subjt:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGE---------------------

Query:  -------------GQCSKTNSDTQRFDLIPMTYIELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
                     GQ SKTNSDT RFD I MTY ELLPQLI+NRQLAPI MIPIQP YPKWY+SNARCD
Subjt:  -------------GQCSKTNSDTQRFDLIPMTYIELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD

KAA0053223.1 uncharacterized protein E6C27_scaffold102G00070 [Cucumis melo var. makuwa]1.34e-9098.52Show/hide
Query:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI
        MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEY IKH RLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI
Subjt:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI

Query:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
        ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
Subjt:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD

TYJ97620.1 uncharacterized protein E5676_scaffold469G00030 [Cucumis melo var. makuwa]9.84e-93100Show/hide
Query:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI
        MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI
Subjt:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI

Query:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
        ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
Subjt:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD

TYK27810.1 uncharacterized protein E5676_scaffold749G00390 [Cucumis melo var. makuwa]9.19e-6682.22Show/hide
Query:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI
        MA E QPSLTD+EMTSMFMNTLRA FY+RMIGNAST  SDI VIGERIEY IKH RL +A  +YGGIKKGT+SKKKEGEGQ  KTNSDT RFD IPMTY 
Subjt:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI

Query:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
        ELLPQLIQNRQL+PI MIPIQPPY KWYDSNARCD
Subjt:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD

TrEMBL top hitse value%identityAlignment
A0A5A7T5W2 Retrotrans_gag domain-containing protein5.9e-5270Show/hide
Query:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGE---------------------
        M  E QP LTD+EMTSMF+NTLRAPFY+RMIGNASTN SDIIVIGERIEY IKH RLA+A  EYGGIKKGT+SKKKEGE                     
Subjt:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGE---------------------

Query:  ----GQCSKTNSDTQRFDLIPMTYIELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
            GQ SKTN DT +FD IPMTY ELLPQLIQNRQ+A I MIPIQPPYPKWYDSNARCD
Subjt:  ----GQCSKTNSDTQRFDLIPMTYIELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD

A0A5A7UBA5 Uncharacterized protein6.9e-6998.52Show/hide
Query:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI
        MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEY IKH RLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI
Subjt:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI

Query:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
        ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
Subjt:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD

A0A5D3BCQ4 Uncharacterized protein1.7e-70100Show/hide
Query:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI
        MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI
Subjt:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI

Query:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
        ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
Subjt:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD

A0A5D3BVZ5 Gag-pro-like protein2.5e-5066.27Show/hide
Query:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGE---------------------
        M  E QP LTD+EMTSMFMNTLRAPFY+RMIGNASTN SDIIVIGERIEY IKH RLA+A  EYGGIKKGT+SK KEGE                     
Subjt:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGE---------------------

Query:  -------------GQCSKTNSDTQRFDLIPMTYIELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
                     GQ SKTNSDT RFD I MTY ELLPQLI+NRQLAPI MIPIQP YPKWY+SNARCD
Subjt:  -------------GQCSKTNSDTQRFDLIPMTYIELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD

A0A5D3DX42 Uncharacterized protein2.2e-5482.22Show/hide
Query:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI
        MA E QPSLTD+EMTSMFMNTLRA FY+RMIGNAST  SDI VIGERIEY IKH RL +A  +YGGIKKGT+SKKKEGEGQ  KTNSDT RFD IPMTY 
Subjt:  MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYI

Query:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD
        ELLPQLIQNRQL+PI MIPIQPPY KWYDSNARCD
Subjt:  ELLPQLIQNRQLAPIRMIPIQPPYPKWYDSNARCD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCGAGGCTCAGCCATCGTTAACAGACCAAGAAATGACATCTATGTTTATGAATACTTTGCGGGCTCCATTCTATGATCGAATGATTGGTAATGCATCAACCAA
TGTTTCTGACATTATTGTTATTGGTGAAAGAATTGAATATGACATAAAGCACGAAAGGTTAGCAGATGCTATAATTGAATATGGTGGAATAAAGAAAGGAACAGTATCTA
AGAAGAAAGAAGGAGAGGGTCAATGTAGCAAGACCAATTCAGATACACAGCGGTTTGATCTAATTCCCATGACTTATATAGAGCTTTTACCTCAGCTAATTCAAAATCGA
CAGTTAGCTCCTATTCGCATGATTCCTATACAACCTCCTTACCCAAAATGGTATGATTCAAATGCTCGATGTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACCGAGGCTCAGCCATCGTTAACAGACCAAGAAATGACATCTATGTTTATGAATACTTTGCGGGCTCCATTCTATGATCGAATGATTGGTAATGCATCAACCAA
TGTTTCTGACATTATTGTTATTGGTGAAAGAATTGAATATGACATAAAGCACGAAAGGTTAGCAGATGCTATAATTGAATATGGTGGAATAAAGAAAGGAACAGTATCTA
AGAAGAAAGAAGGAGAGGGTCAATGTAGCAAGACCAATTCAGATACACAGCGGTTTGATCTAATTCCCATGACTTATATAGAGCTTTTACCTCAGCTAATTCAAAATCGA
CAGTTAGCTCCTATTCGCATGATTCCTATACAACCTCCTTACCCAAAATGGTATGATTCAAATGCTCGATGTGATTAA
Protein sequenceShow/hide protein sequence
MATEAQPSLTDQEMTSMFMNTLRAPFYDRMIGNASTNVSDIIVIGERIEYDIKHERLADAIIEYGGIKKGTVSKKKEGEGQCSKTNSDTQRFDLIPMTYIELLPQLIQNR
QLAPIRMIPIQPPYPKWYDSNARCD