; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0005877 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005877
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionexosome complex component RRP41 homolog
Genome locationchr10:4894140..4897665
RNA-Seq ExpressionIVF0005877
SyntenyIVF0005877
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0004527 - exonuclease activity (molecular function)
GO:0009022 - tRNA nucleotidyltransferase activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034067.1 exosome complex component RRP41-like protein [Cucumis melo var. makuwa]2.54e-151100Show/hide
Query:  MRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFV
        MRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFV
Subjt:  MRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFV

Query:  QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIA
        QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIA
Subjt:  QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIA

Query:  TYIRKVMLDHTKQLEYHRDG
        TYIRKVMLDHTKQLEYHRDG
Subjt:  TYIRKVMLDHTKQLEYHRDG

XP_004143616.1 exosome complex component RRP41 homolog [Cucumis sativus]2.98e-16497.93Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG
        LPIDVFEDVMELAIEGCKAIATYIR VML+HTKQLEYHRDG
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG

XP_008445878.1 PREDICTED: exosome complex component RRP41 homolog [Cucumis melo]1.87e-167100Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG
        LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG

XP_022941604.1 exosome complex component RRP41 homolog [Cucurbita moschata]2.31e-15291.63Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFV+PEGLRLDGRRP E+R++RAEIGAVSKA+GSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR
        LP+D+FE+VM+LAIEGCKA+A YIR+VML+ TK+LEY R
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR

XP_038891797.1 exosome complex component RRP41 homolog [Benincasa hispida]6.44e-15994.61Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFV+PEGLRLDGRRP E+R++RAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG
        LPIDVFE+VM+LAIEGCKAIA+YIR+VMLD+TKQLEYHRDG
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG

TrEMBL top hitse value%identityAlignment
A0A0A0KNI9 Uncharacterized protein6.9e-12897.93Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG
        LPIDVFEDVMELAIEGCKAIATYIR VML+HTKQLEYHRDG
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG

A0A1S3BDQ6 exosome complex component RRP41 homolog2.5e-130100Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG
        LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG

A0A5A7SXS5 Exosome complex component RRP41-like protein1.1e-117100Show/hide
Query:  MRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFV
        MRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFV
Subjt:  MRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFV

Query:  QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIA
        QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIA
Subjt:  QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIA

Query:  TYIRKVMLDHTKQLEYHRDG
        TYIRKVMLDHTKQLEYHRDG
Subjt:  TYIRKVMLDHTKQLEYHRDG

A0A6J1FNX1 exosome complex component RRP41 homolog7.7e-11991.63Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFV+PEGLRLDGRRP E+R++RAEIGAVSKA+GSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR
        LP+D+FE+VM+LAIEGCKA+A YIR+VML+ TK+LEY R
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR

A0A6J1JKC7 exosome complex component RRP41 homolog7.7e-11991.63Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFV+PEGLRLDGRRP E+R++RAEIGAVSKA+GSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR
        LP+D+FE+VM+LAIEGCKA+A YIR+VML+ TK+LEY R
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR

SwissProt top hitse value%identityAlignment
Q5JIR6 Exosome complex component Rrp411.9e-5345.64Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ++ +   G R+DGR+  ELR ++ E+G +  A+GSA  E G  KVLAAVYGPRE+  +  Q  ++A++R  Y MA FS  +R +KP  DRRS EIS VIR
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
          +E  +L H+ PR+ ID+F+++LQAD GTR A I AA+LALADAGIPM+D+V +C+AG ++   +LDLN  ED+ G  DV V  +P  + +TLLQMD  
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG
        L  D F + + LAI+G KA+    R+ + +   ++    +G
Subjt:  LPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHRDG

Q7YRA3 Exosome complex component RRP413.0e-6451.06Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E ++ +G R+DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ +R++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP + +  LP   ++ LL+MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQ
        +L  D  E V+E A    + + T + +V+  H ++
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQ

Q921I9 Exosome complex component RRP411.8e-6451.06Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E ++ +G R+DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ +RS+ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP + +  LP   ++ LL+MD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQ
        +L  D  E V+E A +  + + T +  V+  H ++
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQ

Q9NPD3 Exosome complex component RRP411.8e-6451.06Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E ++ +G R+DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ +R++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP + +  LP   ++ LL+MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQ
        +L  D  E V+E A +  + + T + +V+  H ++
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQ

Q9SP08 Exosome complex component RRP41 homolog9.4e-9877.08Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V PEGLRLDGRR  E+R++ AE+G VSKA+GSA+FEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR
        KLP++ FE V  LA EGCKAIA  IR+V+ ++TKQLEY R
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein3.0e-1429.79Show/hide
Query:  RLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R DGR P +LR +      + + +GSA +  G+TKVLAAVYGP+    +++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSNALLDLNYVEDSAGG-------PDVTVGFLPK
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+ T+  LP+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSNALLDLNYVEDSAGG-------PDVTVGFLPK

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein3.0e-1429.79Show/hide
Query:  RLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R DGR P +LR +      + + +GSA +  G+TKVLAAVYGP+    +++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSNALLDLNYVEDSAGG-------PDVTVGFLPK
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+ T+  LP+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSNALLDLNYVEDSAGG-------PDVTVGFLPK

AT3G61620.1 3'-5'-exoribonuclease family protein6.7e-9977.08Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V PEGLRLDGRR  E+R++ AE+G VSKA+GSA+FEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR
        KLP++ FE V  LA EGCKAIA  IR+V+ ++TKQLEY R
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR

AT3G61620.2 3'-5'-exoribonuclease family protein6.7e-9977.08Show/hide
Query:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V PEGLRLDGRR  E+R++ AE+G VSKA+GSA+FEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR
        KLP++ FE V  LA EGCKAIA  IR+V+ ++TKQLEY R
Subjt:  KLPIDVFEDVMELAIEGCKAIATYIRKVMLDHTKQLEYHR

AT4G27490.1 3'-5'-exoribonuclease family protein1.6e-2028.24Show/hide
Query:  RLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT
        R DGR   + R    + GAVS A+GSA  E GNTKV+ +V+GPRE   ++   S+   + C  +  NF++    +         E S ++ + +E  I+ 
Subjt:  RLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT

Query:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDV
           P++ +D+F  VL++ G   S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P   ++T L +  +       + 
Subjt:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDV

Query:  MELAIEGCKAIATYIR
        M+L ++    +   +R
Subjt:  MELAIEGCKAIATYIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTGTGACCCCCGAAGGACTTCGCCTAGACGGTCGCCGTCCCAGGGAGCTGAGGGAAATGCGAGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTCTGCTCT
TTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTCCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGTGAGTACACCA
TGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACAT
TTAATGCCTCGGTCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCTTGCATAAATGCTGCAACTTTGGCGCTTGCTGATGCTGGAAT
TCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTCGATTTGAATTATGTAGAGGATAGTGCTGGTGGCCCTGACGTCACTGTAG
GCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGATGGACGCCAAATTACCTATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATA
GCTACTTACATTCGAAAAGTAATGTTGGATCATACGAAGCAACTCGAATATCATCGCGATGGATAG
mRNA sequenceShow/hide mRNA sequence
CCTCAACCCTCCTACGGTTCCCTTTTTCCTAAACCCTATTTCACTACCTCCCAGACGCTGCACTCCACCTTGCCACCCCTCTGCCCGCGGCCGCCGCCGTACACTACACT
CTCTGCTTCCCCAGTCCAGCCTCTCCACAAACTAACCGCTGCACCCTCCCTTTCGCACTCTCTCGTCTCTCCCAGCAATCAAAGTTACGATCTTTCTTAGAAACACAGTG
ATTCAGCCCCTAACCCGAACTGACCTGTACCTTTCGGGCGAAAATTGCAACGTTCTGTTCCCCAATGGAGTTTGTGACCCCCGAAGGACTTCGCCTAGACGGTCGCCGTC
CCAGGGAGCTGAGGGAAATGCGAGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTCTGCTCTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCA
AGAGAGGTCCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGA
CAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGGTCTCAGATAGATATTTTTGTCCAAGTTCTTCAAG
CAGATGGAGGTACCAGATCAGCTTGCATAAATGCTGCAACTTTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAAT
AGCAATGCTTTGCTCGATTTGAATTATGTAGAGGATAGTGCTGGTGGCCCTGACGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTTACTCTTCTACAGATGGACGC
CAAATTACCTATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAAAGTAATGTTGGATCATACGAAGCAACTCG
AATATCATCGCGATGGATAGCCAAAAACTGTTTTGAGCACTCTTACCCATAGGAAAGAGATTTCAATTGTTTTAAGGGATAATGAAGTTATTGATGCCTCTTTTTCTCAT
CTCTCAGTTGTGAATTAATCTCTCTTACCCTAATCAATGTACAGAATGTGTTTTTCTCTTTCCCTTATATTTCACCAAATTTTTTTCTCTTCTTTAATTAGCATGATAGA
AAGTTGAATTCATATTATCTCTTACTTATTTTGTTTTGTTCCATAAATTTCATATCAAACCCAAATTTGTATAAAAAGT
Protein sequenceShow/hide protein sequence
MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTH
LMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAI
ATYIRKVMLDHTKQLEYHRDG