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IVF0005943 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005943
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr09:15095928..15096362
RNA-Seq ExpressionIVF0005943
SyntenyIVF0005943
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032755.1 reverse transcriptase [Cucumis melo var. makuwa]4.11e-8994.44Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA+VNW
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFE
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

KAA0036001.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.39e-8995.83Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMD MNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVS KGV VDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
        ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTA+TRKNAKFE
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

KAA0061419.1 reverse transcriptase [Cucumis melo var. makuwa]1.14e-8997.22Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPF LTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
        ERPTSATEV SFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

TYK23887.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.75e-9095.14Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFE
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

TYK25908.1 Retrotransposon protein [Cucumis melo var. makuwa]1.25e-9095.14Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFE
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

TrEMBL top hitse value%identityAlignment
A0A5A7T306 DNA/RNA polymerases superfamily protein1.9e-7295.83Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMD MNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVS KGV VDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
        ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTA+TRKNAKFE
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

A0A5A7TA17 Putative gag-pol polyprotein3.8e-7397.22Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
        ERPTSATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNAKFE
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

A0A5A7UBV9 Uncharacterized protein1.1e-7297.22Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        M FGLTNAP VFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
        ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

A0A5D3BEU1 DNA/RNA polymerases superfamily protein3.8e-7397.22Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
        ERPTSATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNAKFE
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

A0A5D3DZ50 DNA/RNA polymerases superfamily protein3.2e-7297.22Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPF LTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
        ERPTSATEV SFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.69.4e-2940.28Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGL NAP  F   MN I    L++  +V++DDI+V+S   + H + L +V + L    L  +  KCEF  ++  FLGHV++  G+  +P+K+EA+  +
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
          PT   E+++FLGL GYYR+FI +F+ +A P+T   +KN K +
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

P10401 Retrovirus-related Pol polyprotein from transposon gypsy3.5e-2336.23Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        +PFGL NA ++F   ++ +  + + +   V++DD++++S +   H  H+  VL+ L D  +     K  F+ E V +LG +VS  G   DP+KV+A+  +
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR
          P    +VRSFLGLA YYR FI+DF+ +A P+T + +
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR

P20825 Retrovirus-related Pol polyprotein from transposon 2974.7e-2839.58Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGL NAP  F   MN I    L++  +V++DDI+++S     H   +++V   L D  L  +  KCEF  ++  FLGH+V+  G+  +P KV+A+V++
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE
          PT   E+R+FLGL GYYR+FI +++ +A P+T+  +K  K +
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

P92523 Uncharacterized mitochondrial protein AtMg008608.5e-2248.96Show/hide
Query:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNA
        HL +VLQ     Q YA   KC F   Q+ +LG  H++SG+GVS DP K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN+
Subjt:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNA

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.7e-2842.03Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        +PFGL NAP +F  +++ I  +++ +   V+IDDI+V+S D + H ++LR+VL +L    L     K  F   QV FLG++V+  G+  DP+KV A+   
Subjt:  MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR
          PTS  E++ FLG+  YYR+FI+D++++A PLT LTR
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein6.1e-2348.96Show/hide
Query:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNA
        HL +VLQ     Q YA   KC F   Q+ +LG  H++SG+GVS DP K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN+
Subjt:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTCGGTTTAACGAATGCACCAACGGTCTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATCGTGTTCATCGATGATATATTAGT
TTACTCGGTTGACAGAGAAGCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTATGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAC
AAGTAGTATTTTTGGGACATGTAGTTTCAGGAAAAGGAGTTAGTGTTGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGT
AGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCTTTGACTGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCGGTTTAACGAATGCACCAACGGTCTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATCGTGTTCATCGATGATATATTAGT
TTACTCGGTTGACAGAGAAGCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTATGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAC
AAGTAGTATTTTTGGGACATGTAGTTTCAGGAAAAGGAGTTAGTGTTGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGT
AGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCTTTGACTGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGA
Protein sequenceShow/hide protein sequence
MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVR
SFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE