CuGenDBv2

Gene ID	IVF0005967
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PseudoU_synth_1 domain-containing protein
Genome location	chr12:13694..14404
RNA-Seq Expression	IVF0005967
Synteny	IVF0005967
Gene Ontology terms	GO:0031119 - tRNA pseudouridine synthesis (biological process) GO:0003723 - RNA binding (molecular function) GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domains	IPR001406 - Pseudouridine synthase I, TruA IPR020095 - Pseudouridine synthase I, TruA, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059994.1 putative tRNA pseudouridine synthase [Cucumis melo var. makuwa]

5.48e-142

100

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWKYRRMGSSLVCVRGVINCISYGNWALNGHGLWPPTRRGHFNSAASTADNQLGTAQPQGSELAFNVNGLKAKYVGESL
        KLDKYTSIPNEELDEVRSAWKAWKYRRMGSSLVCVRGVINCISYGNWALNGHGLWPPTRRGHFNSAASTADNQLGTAQPQGSELAFNVNGLKAKYVGESL
Subjt:  KLDKYTSIPNEELDEVRSAWKAWKYRRMGSSLVCVRGVINCISYGNWALNGHGLWPPTRRGHFNSAASTADNQLGTAQPQGSELAFNVNGLKAKYVGESL

XP_004145230.1 putative tRNA pseudouridine synthase isoform X2 [Cucumis sativus]

1.82e-69

90.48

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        MI TAVAVKRKLLPRD+I LSLTKFSRIVLPIAPAEVLVLRGNSFS RKRPG P R +L TLNESDDI+ SVNEFYRSAILPEVT+FLDTESPPWKEWVE
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWKYR
        KLDKYTSIPNEELDEVRSAWKAWKYR
Subjt:  KLDKYTSIPNEELDEVRSAWKAWKYR

XP_008457308.1 PREDICTED: putative tRNA pseudouridine synthase [Cucumis melo]

2.26e-77

100

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWKYR
        KLDKYTSIPNEELDEVRSAWKAWKYR
Subjt:  KLDKYTSIPNEELDEVRSAWKAWKYR

XP_038894774.1 putative tRNA pseudouridine synthase isoform X1 [Benincasa hispida]

1.57e-70

90.48

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        MIGTA+AVKRKLLPRDVIALSL+KFSRIVLPIAPAEVLVLRGNSFS RKRPGVP RPDL+TLNESDDI+KSVNEFYRSAILPEVT FLDTE PPWKEWVE
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWKYR
        KLDKYTSIP+E+LDEVR+AWKAW YR
Subjt:  KLDKYTSIPNEELDEVRSAWKAWKYR

XP_038894775.1 putative tRNA pseudouridine synthase isoform X2 [Benincasa hispida]

1.90e-71

90.48

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        MIGTA+AVKRKLLPRDVIALSL+KFSRIVLPIAPAEVLVLRGNSFS RKRPGVP RPDL+TLNESDDI+KSVNEFYRSAILPEVT FLDTE PPWKEWVE
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWKYR
        KLDKYTSIP+E+LDEVR+AWKAW YR
Subjt:  KLDKYTSIPNEELDEVRSAWKAWKYR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M0Z2 PseudoU_synth_1 domain-containing protein

2.4e-57

90.48

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        MI TAVAVKRKLLPRD+I LSLTKFSRIVLPIAPAEVLVLRGNSFS RKRPG P R +L TLNESDDI+ SVNEFYRSAILPEVT+FLDTESPPWKEWVE
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWKYR
        KLDKYTSIPNEELDEVRSAWKAWKYR
Subjt:  KLDKYTSIPNEELDEVRSAWKAWKYR

A0A1S3C5W1 putative tRNA pseudouridine synthase

1.7e-63

100

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWKYR
        KLDKYTSIPNEELDEVRSAWKAWKYR
Subjt:  KLDKYTSIPNEELDEVRSAWKAWKYR

A0A5A7UY60 Putative tRNA pseudouridine synthase

7.0e-110

100

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWKYRRMGSSLVCVRGVINCISYGNWALNGHGLWPPTRRGHFNSAASTADNQLGTAQPQGSELAFNVNGLKAKYVGESL
        KLDKYTSIPNEELDEVRSAWKAWKYRRMGSSLVCVRGVINCISYGNWALNGHGLWPPTRRGHFNSAASTADNQLGTAQPQGSELAFNVNGLKAKYVGESL
Subjt:  KLDKYTSIPNEELDEVRSAWKAWKYRRMGSSLVCVRGVINCISYGNWALNGHGLWPPTRRGHFNSAASTADNQLGTAQPQGSELAFNVNGLKAKYVGESL

A0A6J1DMV6 putative tRNA pseudouridine synthase isoform X2

2.5e-54

87.1

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        M+GTAVAVKRKLLPRD+IALSLTKFSRIVLPIAPAEVLVLRGNSFS  KRPG P RPDL+TLN+SDDIIKSV+EFYRSAILPE+T FLDTE  PW EWVE
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWK
        KLDKYTSIPNE+LDEVR+AWKAWK
Subjt:  KLDKYTSIPNEELDEVRSAWKAWK

A0A6J1I156 putative tRNA pseudouridine synthase

1.9e-54

86.18

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        M+GTA+AVKRKLLPRD+IALSL+KFSRIVLPIAPAEVLVLRGN FS RKRPG P RPDL+TLN+SDDI+KSVNEFYRSAILPEVT FLD E PPWKEWVE
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAW
        KLDKYTSIPNE+L+EVR+AWKAW
Subjt:  KLDKYTSIPNEELDEVRSAWKAW

SwissProt top hits

e value

%identity

Alignment

O22928 Putative tRNA pseudouridine synthase

1.4e-35

56.45

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        MIGTAVAVKR+LLPRD+I LSL KF+RIVLP+AP+EVL+LRGNSF  R+   +P RP +    ES+++ K + EFYR+ ++P+V+ FLD+E  PWKEWV+
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWK
         LD+   + +EEL++VR  W+ WK
Subjt:  KLDKYTSIPNEELDEVRSAWKAWK

Arabidopsis top hits

e value

%identity

Alignment

AT2G30320.1 Pseudouridine synthase family protein

1.0e-36

56.45

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Query:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE
        MIGTAVAVKR+LLPRD+I LSL KF+RIVLP+AP+EVL+LRGNSF  R+   +P RP +    ES+++ K + EFYR+ ++P+V+ FLD+E  PWKEWV+
Subjt:  MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE

Query:  KLDKYTSIPNEELDEVRSAWKAWK
         LD+   + +EEL++VR  W+ WK
Subjt:  KLDKYTSIPNEELDEVRSAWKAWK

Sequences

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CDS sequence

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ATGATAGGAACGGCTGTGGCAGTGAAGCGGAAACTTCTCCCAAGAGATGTTATAGCATTGTCACTGACCAAGTTCTCTAGAATAGTTCTACCCATTGCTCCAGCTGAGGT
CTTAGTCCTAAGAGGTAACAGTTTTTCCACCAGAAAACGGCCAGGAGTTCCAACAAGGCCAGACTTGGTCACACTGAATGAATCGGATGACATAATCAAGTCAGTGAATG
AATTCTACAGATCAGCGATATTGCCCGAGGTAACTGAGTTCCTGGACACAGAAAGCCCCCCATGGAAAGAATGGGTGGAGAAATTGGACAAGTACACAAGCATTCCGAAT
GAAGAATTGGATGAAGTTAGGAGTGCTTGGAAAGCATGGAAGTACAGGAGGATGGGAAGCAGTTTAGTTTGTGTTAGGGGAGTTATTAATTGCATAAGTTATGGGAATTG
GGCATTGAATGGACATGGTCTGTGGCCACCCACCAGGCGGGGGCATTTTAATAGCGCAGCATCAACCGCAGACAATCAACTCGGGACGGCACAACCACAAGGGAGTGAGC
TCGCATTCAATGTAAATGGCTTAAAGGCGAAGTATGTAGGTGAGAGCCTTTGA

mRNA sequence

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Protein sequence

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MIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVLRGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVEKLDKYTSIPN
EELDEVRSAWKAWKYRRMGSSLVCVRGVINCISYGNWALNGHGLWPPTRRGHFNSAASTADNQLGTAQPQGSELAFNVNGLKAKYVGESL

IVF0005967 (gene) of Melon (IVF77) v1 genome