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IVF0005968 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005968
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr07:8471172..8471723
RNA-Seq ExpressionIVF0005968
SyntenyIVF0005968
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064182.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.71e-70100Show/hide
Query:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK
        MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK
Subjt:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK

Query:  NSSNSLSNDEKKAKHKKK
        NSSNSLSNDEKKAKHKKK
Subjt:  NSSNSLSNDEKKAKHKKK

KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.19e-2352.17Show/hide
Query:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKG
        MD +K+L +N+ EFKK  S+FK L DK+ DENE ++LLNSLP+AYK VK+A +Y +  + T  ++SAIRTREL+    +++  NG+GLF KG
Subjt:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKG

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]1.48e-2737.65Show/hide
Query:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK
        MDP+K+LTDN++EFK   S+F+S+ D + +ENE ++LLNSLP+ +K VK A KY ++ + T AI+SA+  +ELE Q+++K+   G+G F KG        
Subjt:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK

Query:  NSSNSLSNDEKKAKHKKKCKYCKKKGHLIQDCFFLKKKNQEKEKDSKGKKPKTSIVESSFIYSDALASTQ
               N++   +  +  + C +   + +DC+ LK+K  ++ K   GK+ + ++ E+S +YSDALA+T+
Subjt:  NSSNSLSNDEKKAKHKKKCKYCKKKGHLIQDCFFLKKKNQEKEKDSKGKKPKTSIVESSFIYSDALASTQ

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]7.84e-2250.54Show/hide
Query:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGK
        MD +K+LTD ++EFK+  SEF+S+   + +ENE ++LLNSLP+++K  K A KY ++ + T+AI+SA+R RELE Q+S+K    G+GLF KGK
Subjt:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGK

XP_038896323.1 uncharacterized protein LOC120084587 [Benincasa hispida]3.31e-2662.5Show/hide
Query:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGL
        MD SKTLT+N DEFKK V+EFK+L +KLSD+NE YVL NSLP++YK +K A KY +DS  T  I+SA+RTRELE Q+ +K H NG+G+
Subjt:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGL

TrEMBL top hitse value%identityAlignment
A0A5A7UB25 Putative gag-pol polyprotein4.1e-1638.64Show/hide
Query:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK
        MD SK+L +N+DEF+K V +  ++ +K+SDEN+  +LLNSLP+ Y+ VK A KY +DS+    ++ A++TR LE    +KE  +G+ L  +G+ +   WK
Subjt:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK

Query:  NSSNSLSNDEKKAKHKKKCKYCKKKGHLIQDC
            S  +  K     +KC  C K+GH  ++C
Subjt:  NSSNSLSNDEKKAKHKKKCKYCKKKGHLIQDC

A0A5A7V734 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-55100Show/hide
Query:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK
        MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK
Subjt:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK

Query:  NSSNSLSNDEKKAKHKKK
        NSSNSLSNDEKKAKHKKK
Subjt:  NSSNSLSNDEKKAKHKKK

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-944.4e-1852.17Show/hide
Query:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKG
        MD +K+L +N+ EFKK  S+FK L DK+ DENE ++LLNSLP+AYK VK+A +Y +  + T  ++SAIRTREL+    +++  NG+GLF KG
Subjt:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKG

A0A5D3DNU1 Putative gag-pol polyprotein4.1e-1638.64Show/hide
Query:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK
        MD SK+L +N+DEF+K V +  ++ +K+SDEN+  +LLNSLP+ Y+ VK A KY +DS+    ++ A++TR LE    +KE  +G+ L  +G+ +   WK
Subjt:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWK

Query:  NSSNSLSNDEKKAKHKKKCKYCKKKGHLIQDC
            S  +  K     +KC  C K+GH  ++C
Subjt:  NSSNSLSNDEKKAKHKKKCKYCKKKGHLIQDC

A0A6J1DGM8 uncharacterized protein LOC1110199001.4e-1659.21Show/hide
Query:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQ
        MD SKTL+DN+D+FKK  SEF SL +K+  ENE ++LLNSLP++Y+ VK+A KY ++S+ TDAI+SA++T+ELE Q
Subjt:  MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTTCCAAAACTTTGACAGACAACATAGATGAGTTCAAGAAGACTGTTTCAGAATTTAAAAGTTTGGAGGATAAACTCAGTGATGAAAATGAAGTCTATGTTCT
TCTAAATTCTCTACCCAAAGCTTACAAAGTGGTAAAAATTGCACCCAAATATGCTAAAGACTCAGTAAAAACAGATGCAATTGTATCAGCCATTAGAACAAGAGAATTAG
AATTTCAGTTATCACAAAAAGAGCATCACAATGGAGATGGTTTATTTGTCAAAGGCAAACTTCAATCTAATCAGTGGAAAAACAGTAGCAACTCTCTTTCAAATGATGAA
AAGAAGGCAAAACATAAGAAGAAATGTAAATATTGCAAGAAGAAGGGGCATCTAATCCAAGATTGTTTTTTTCTTAAGAAAAAGAATCAAGAGAAAGAAAAAGATTCAAA
AGGAAAGAAACCCAAAACCTCTATAGTAGAAAGCTCATTTATCTATTCTGATGCTTTGGCATCAACTCAAGACCAAGCCAATCATGTTACCCCCTTTGGTAAACATGATT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTTCCAAAACTTTGACAGACAACATAGATGAGTTCAAGAAGACTGTTTCAGAATTTAAAAGTTTGGAGGATAAACTCAGTGATGAAAATGAAGTCTATGTTCT
TCTAAATTCTCTACCCAAAGCTTACAAAGTGGTAAAAATTGCACCCAAATATGCTAAAGACTCAGTAAAAACAGATGCAATTGTATCAGCCATTAGAACAAGAGAATTAG
AATTTCAGTTATCACAAAAAGAGCATCACAATGGAGATGGTTTATTTGTCAAAGGCAAACTTCAATCTAATCAGTGGAAAAACAGTAGCAACTCTCTTTCAAATGATGAA
AAGAAGGCAAAACATAAGAAGAAATGTAAATATTGCAAGAAGAAGGGGCATCTAATCCAAGATTGTTTTTTTCTTAAGAAAAAGAATCAAGAGAAAGAAAAAGATTCAAA
AGGAAAGAAACCCAAAACCTCTATAGTAGAAAGCTCATTTATCTATTCTGATGCTTTGGCATCAACTCAAGACCAAGCCAATCATGTTACCCCCTTTGGTAAACATGATT
AG
Protein sequenceShow/hide protein sequence
MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWKNSSNSLSNDE
KKAKHKKKCKYCKKKGHLIQDCFFLKKKNQEKEKDSKGKKPKTSIVESSFIYSDALASTQDQANHVTPFGKHD