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IVF0006003 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006003
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr05:20868889..20869513
RNA-Seq ExpressionIVF0006003
SyntenyIVF0006003
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044982.1 transposase [Cucumis melo var. makuwa]2.02e-3866.98Show/hide
Query:  MTTSSRAPKHVWTKEEEDTLVECLVEFT--GDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEE
        M T SRA  HVWTKEEEDTL+ECLVE    GD N  M     SHP A GLLNK F YYD+L Y+FGRDR  D F +TF DVGSNEL E+EGF+MSDGNE 
Subjt:  MTTSSRAPKHVWTKEEEDTLVECLVEFT--GDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEE

Query:  FPSMYS
        FPS+YS
Subjt:  FPSMYS

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]2.31e-3767.31Show/hide
Query:  MTTSSRAPKHVWTKEEEDTLVECLVEFTGDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEEFP
        M TSS APKHVWTKEE+DTLVECLVE              SHP AKGL NK F YYDELAYVFG DR+MD F +TF DVGSN+ +EY+ F+M DGNEEFP
Subjt:  MTTSSRAPKHVWTKEEEDTLVECLVEFTGDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEEFP

Query:  SMYS
        SMYS
Subjt:  SMYS

TYK01339.1 retrotransposon protein [Cucumis melo var. makuwa]7.05e-4673.28Show/hide
Query:  MTTSSRAPKHVWTKEEEDTLV-------ECLVEFTGDENSTMVRS-------VHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIE
        MTTSSRAPKHVWTKEEEDTL         C    + D+   ++         V SHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIE
Subjt:  MTTSSRAPKHVWTKEEEDTLV-------ECLVEFTGDENSTMVRS-------VHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIE

Query:  YEGFNMSDGNEEFPSM
        YEGFNMSDGNEEFPSM
Subjt:  YEGFNMSDGNEEFPSM

TYK16489.1 transposase [Cucumis melo var. makuwa]4.73e-3866.67Show/hide
Query:  SRAPKHVWTKEEEDTLVECLVEFTG--DENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEEFPSM
        SRA  HVWTKEEEDTL+ECLVE     D N  +V S  SHP  KGLL+K F YYDEL Y+FGRDR  D F +TF +VGSNEL E+EGF+MSDGNE FPS+
Subjt:  SRAPKHVWTKEEEDTLVECLVEFTG--DENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEEFPSM

Query:  YS
        YS
Subjt:  YS

TYK26911.1 retrotransposon protein [Cucumis melo var. makuwa]4.53e-3968.27Show/hide
Query:  MTTSSRAPKHVWTKEEEDTLVECLVEFT--GDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEE
        M+TS  APKHVWTKEEEDT VECL+E    GDE       + S+  A  LLNKLF YYDELAYVFGRDR MD FAETF DVGSNE + YEGF+M DGNEE
Subjt:  MTTSSRAPKHVWTKEEEDTLVECLVEFT--GDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEE

Query:  FPSM
        FPS+
Subjt:  FPSM

TrEMBL top hitse value%identityAlignment
A0A5A7TNP3 Transposase1.2e-2866.98Show/hide
Query:  MTTSSRAPKHVWTKEEEDTLVECLVEFT--GDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEE
        M T SRA  HVWTKEEEDTL+ECLVE    GD N  M     SHP A GLLNK F YYD+L Y+FGRDR  D F +TF DVGSNEL E+EGF+MSDGN E
Subjt:  MTTSSRAPKHVWTKEEEDTLVECLVEFT--GDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEE

Query:  FPSMYS
        FPS+YS
Subjt:  FPSMYS

A0A5A7U4I8 Retrotransposon protein7.1e-2967.31Show/hide
Query:  MTTSSRAPKHVWTKEEEDTLVECLVEFTGDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEEFP
        M TSS APKHVWTKEE+DTLVECLVE              SHP AKGL NK F YYDELAYVFG DR+MD F +TF DVGSN+ +EY+ F+M DGNEEFP
Subjt:  MTTSSRAPKHVWTKEEEDTLVECLVEFTGDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEEFP

Query:  SMYS
        SMYS
Subjt:  SMYS

A0A5D3BTD4 Retrotransposon protein2.7e-3670.83Show/hide
Query:  MTTSSRAPKHVWTKEEEDTL------------------VECLVEFTGDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSN
        MTTSSRAPKHVWTKEEEDTL                   +C++     +N      V SHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSN
Subjt:  MTTSSRAPKHVWTKEEEDTL------------------VECLVEFTGDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSN

Query:  ELIEYEGFNMSDGNEEFPSM
        ELIEYEGFNMSDGNEEFPSM
Subjt:  ELIEYEGFNMSDGNEEFPSM

A0A5D3D1Y9 Transposase2.1e-2865.09Show/hide
Query:  MTTSSRAPKHVWTKEEEDTLVECLVEFTG--DENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEE
        M   SRA  HVWTKEEEDTL+ECLVE     D N  +V S  SHP  KGLL+K F YYDEL Y+FGRDR  D F +TF +VGSNEL E+EGF+MSDGN E
Subjt:  MTTSSRAPKHVWTKEEEDTLVECLVEFTG--DENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEE

Query:  FPSMYS
        FPS+YS
Subjt:  FPSMYS

A0A5D3DT73 Retrotransposon protein5.4e-2968.27Show/hide
Query:  MTTSSRAPKHVWTKEEEDTLVECLVEFT--GDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEE
        M+TS  APKHVWTKEEEDT VECL+E    GDE       + S+  A  LLNKLF YYDELAYVFGRDR MD FAETF DVGSNE + YEGF+M DGNEE
Subjt:  MTTSSRAPKHVWTKEEEDTLVECLVEFT--GDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEE

Query:  FPSM
        FPS+
Subjt:  FPSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACCTCCTCTCGTGCACCAAAGCATGTATGGACGAAGGAGGAGGAAGACACTCTTGTAGAGTGTTTAGTGGAATTCACGGGGGATGAAAATTCGACAATGGTACG
TTCCGTCCATTCGCATCCAGTAGCGAAGGGGCTCCTTAACAAACTCTTTCTCTATTACGACGAACTTGCATATGTATTTGGTCGTGATAGGGTGATGGATCACTTCGCTG
AGACATTCGCCGACGTCGGGTCTAACGAGCTTATCGAGTATGAGGGATTTAACATGTCGGATGGGAACGAGGAGTTCCCATCCATGTACAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAACCTCCTCTCGTGCACCAAAGCATGTATGGACGAAGGAGGAGGAAGACACTCTTGTAGAGTGTTTAGTGGAATTCACGGGGGATGAAAATTCGACAATGGTACG
TTCCGTCCATTCGCATCCAGTAGCGAAGGGGCTCCTTAACAAACTCTTTCTCTATTACGACGAACTTGCATATGTATTTGGTCGTGATAGGGTGATGGATCACTTCGCTG
AGACATTCGCCGACGTCGGGTCTAACGAGCTTATCGAGTATGAGGGATTTAACATGTCGGATGGGAACGAGGAGTTCCCATCCATGTACAGCTAG
Protein sequenceShow/hide protein sequence
MTTSSRAPKHVWTKEEEDTLVECLVEFTGDENSTMVRSVHSHPVAKGLLNKLFLYYDELAYVFGRDRVMDHFAETFADVGSNELIEYEGFNMSDGNEEFPSMYS