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IVF0006018 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006018
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr05:3050969..3051375
RNA-Seq ExpressionIVF0006018
SyntenyIVF0006018
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037926.1 retrotransposon protein [Cucumis melo var. makuwa]1.69e-3758.41Show/hide
Query:  SFHPCRTRGLTCPKRMYVHHDLLVRQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEM
        S HPC  RGLTC +RMY HH+LL  QT           CTNDQL+   EW A  L NDT+V  EFL LL EM +L+SLDR LCQR L+S MDDM+GFV+M
Subjt:  SFHPCRTRGLTCPKRMYVHHDLLVRQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEM

Query:  SDEERKNFCRVLI
        +D+E++NFCRVL+
Subjt:  SDEERKNFCRVLI

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]5.66e-3770.79Show/hide
Query:  RQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI
        +Q GE EVIHM +ECTNDQLR I EW A  LANDT VR E LRLLH M +L+SLDRVLCQR L+S MDDMRGF++M D+ER+NFCRVL+
Subjt:  RQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI

KAA0051652.1 retrotransposon protein [Cucumis melo var. makuwa]1.20e-3770.79Show/hide
Query:  RQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI
        ++ GE +VIHM LEC NDQLR I EW A  L NDT V  EFLRLL +M +LSSLDR LCQR+LMSH+DDMRGFVEM+D+ERKNFCRVL+
Subjt:  RQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI

KAA0057338.1 retrotransposon protein [Cucumis melo var. makuwa]4.19e-51100Show/hide
Query:  MTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI
        MTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI
Subjt:  MTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI

KAA0066818.1 retrotransposon protein [Cucumis melo var. makuwa]1.21e-3763.48Show/hide
Query:  RMYVHHDLLVRQT----------------GEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFV
        R+Y HH+LL RQ                 GE EVIHM LEC NDQLR I +W    LANDTFVR EFLRLL EM +LSSLDR LCQRQLMSHMDDMR FV
Subjt:  RMYVHHDLLVRQT----------------GEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFV

Query:  EMSDEERKNFCRVLI
        EM+ EERK F RVL+
Subjt:  EMSDEERKNFCRVLI

TrEMBL top hitse value%identityAlignment
A0A5A7T6W3 Retrotransposon protein6.1e-2958.41Show/hide
Query:  SFHPCRTRGLTCPKRMYVHHDLLVRQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEM
        S HPC  RGLTC +RMY HH+LL  QT           CTNDQL+   EW A  L NDT+V  EFL LL EM +L+SLDR LCQR L+S MDDM+GFV+M
Subjt:  SFHPCRTRGLTCPKRMYVHHDLLVRQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEM

Query:  SDEERKNFCRVLI
        +D+E++NFCRVL+
Subjt:  SDEERKNFCRVLI

A0A5A7U4I8 Retrotransposon protein4.0e-2870.79Show/hide
Query:  RQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI
        +Q GE EVIHM +ECTNDQLR I EW A  LANDT VR E LRLLH M +L+SLDRVLCQR L+S MDDMRGF++M D+ER+NFCRVL+
Subjt:  RQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI

A0A5A7U7C8 Retrotransposon protein1.5e-2770.79Show/hide
Query:  RQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI
        ++ GE +VIHM LEC NDQLR I EW A  L NDT V  EFLRLL +M +LSSLDR LCQR+LMSH+DDMRGFVEM+D+ERKNFCRVL+
Subjt:  RQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI

A0A5A7UQE2 Retrotransposon protein1.6e-37100Show/hide
Query:  MTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI
        MTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI
Subjt:  MTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEERKNFCRVLI

A0A5A7VGC2 Retrotransposon protein2.8e-2963.48Show/hide
Query:  RMYVHHDLLVRQT----------------GEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFV
        R+Y HH+LL RQ                 GE EVIHM LEC NDQLR I +W    LANDTFVR EFLRLL EM +LSSLDR LCQRQLMSHMDDMR FV
Subjt:  RMYVHHDLLVRQT----------------GEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFV

Query:  EMSDEERKNFCRVLI
        EM+ EERK F RVL+
Subjt:  EMSDEERKNFCRVLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACGATATGGAGTTTCCATCCATGTAGAACTAGGGGATTGACATGTCCCAAGAGGATGTACGTGCATCACGACCTACTCGTGCGTCAAACGGGTGAGTTTGAGGT
GATACATATGACCCTGGAGTGTACGAATGATCAGCTTAGGGCCATTTTCGAGTGGCATGCGCATGAACTTGCCAATGACACCTTTGTTCGCCCGGAATTCTTACGCCTAT
TGCATGAGATGTCTGACCTAAGCAGTTTGGATAGGGTGTTGTGCCAAAGGCAGCTTATGTCTCATATGGACGATATGCGCGGTTTCGTAGAGATGAGTGACGAAGAGAGG
AAGAACTTTTGCAGAGTCCTCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACGATATGGAGTTTCCATCCATGTAGAACTAGGGGATTGACATGTCCCAAGAGGATGTACGTGCATCACGACCTACTCGTGCGTCAAACGGGTGAGTTTGAGGT
GATACATATGACCCTGGAGTGTACGAATGATCAGCTTAGGGCCATTTTCGAGTGGCATGCGCATGAACTTGCCAATGACACCTTTGTTCGCCCGGAATTCTTACGCCTAT
TGCATGAGATGTCTGACCTAAGCAGTTTGGATAGGGTGTTGTGCCAAAGGCAGCTTATGTCTCATATGGACGATATGCGCGGTTTCGTAGAGATGAGTGACGAAGAGAGG
AAGAACTTTTGCAGAGTCCTCATATGA
Protein sequenceShow/hide protein sequence
METIWSFHPCRTRGLTCPKRMYVHHDLLVRQTGEFEVIHMTLECTNDQLRAIFEWHAHELANDTFVRPEFLRLLHEMSDLSSLDRVLCQRQLMSHMDDMRGFVEMSDEER
KNFCRVLI