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IVF0006037 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006037
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr08:14856081..14856506
RNA-Seq ExpressionIVF0006037
SyntenyIVF0006037
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043534.1 retrotransposon protein [Cucumis melo var. makuwa]4.58e-4096Show/hide
Query:  QLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQEDS
        +LRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSL DM GFLKMIDEEKMDFYTILLQEDS
Subjt:  QLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQEDS

KAA0056139.1 retrotransposon protein [Cucumis melo var. makuwa]5.92e-3551.08Show/hide
Query:  DENDMEILTMYIKGFNMF------------------QNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRL
        D ND+EI TMY +GFNM                   Q+D       ++V  ++LIH+A+K  NDQLR I +W  VAL+N+TTV QEVL QL A+ ELSRL
Subjt:  DENDMEILTMYIKGFNMF------------------QNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRL

Query:  ERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQEDS
        +R  YS+ILF +LDDMRGFL+++++EKMDF T+LL+EDS
Subjt:  ERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQEDS

KAA0060299.1 retrotransposon protein [Cucumis melo var. makuwa]1.12e-4160Show/hide
Query:  MSDENDMEILTMYIKGFNMFQNDVRTSQP--------------RKQ----VGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELS
        M D NDMEI TMY  GFNM Q+DV TS+P              RK+    VGEIELIHE ++YVNDQLRAI +WP V L N+TTVRQEVL +LRAMLELS
Subjt:  MSDENDMEILTMYIKGFNMFQNDVRTSQP--------------RKQ----VGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELS

Query:  RLERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQED
        RL+R   S  LF SLD+M   L+M +EEKM+F TILL+ED
Subjt:  RLERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQED

TYK02497.1 retrotransposon protein [Cucumis melo var. makuwa]2.35e-5578.86Show/hide
Query:  MSDENDMEILTMYIKGFNMFQNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDM
        MSDENDMEILTMYIKGFNMFQND                          LRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDM
Subjt:  MSDENDMEILTMYIKGFNMFQNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDM

Query:  RGFLKMIDEEKMDFYTILLQEDS
        RGFLKMIDEEKMDFYTILLQEDS
Subjt:  RGFLKMIDEEKMDFYTILLQEDS

TYK14144.1 retrotransposon protein [Cucumis melo var. makuwa]2.55e-2953.78Show/hide
Query:  DENDMEILTMYIKGFNMFQNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDMRG
        D ND+EI TMY +GFNM          ++  G  +L+   +   NDQLRAI +WP VAL+N+TTVRQEVL QL A+ ELSRL+    S+ILF +LDDMRG
Subjt:  DENDMEILTMYIKGFNMFQNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDMRG

Query:  FLKMIDEEKMDFYTILLQE
        FL+++++EKMDF T+LL+E
Subjt:  FLKMIDEEKMDFYTILLQE

TrEMBL top hitse value%identityAlignment
A0A5A7TJP4 Retrotransposon protein5.8e-3096Show/hide
Query:  QLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQEDS
        +LRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSL DM GFLKMIDEEKMDFYTILLQEDS
Subjt:  QLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQEDS

A0A5A7URM1 Retrotransposon protein1.0e-2650.35Show/hide
Query:  MSDENDMEILTMYIKGFNMF------------------QNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELS
        + D ND+EI TMY +GFNM                   Q+D       ++V  ++LIH+A+K  NDQLR I +W  VAL+N+TTV QEVL QL A+ ELS
Subjt:  MSDENDMEILTMYIKGFNMF------------------QNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELS

Query:  RLERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQEDS
        RL+R  YS+ILF +LDDMRGFL+++++EKMDF T+LL+EDS
Subjt:  RLERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQEDS

A0A5A7V3G0 Retrotransposon protein4.0e-3158.57Show/hide
Query:  MSDENDMEILTMYIKGFNMFQNDVRTSQP------------------RKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELS
        M D NDMEI TMY  GFNM Q+DV TS+P                   ++VGEIELIHE ++YVNDQLRAI +WP V L N+TTVRQEVL +LRAMLELS
Subjt:  MSDENDMEILTMYIKGFNMFQNDVRTSQP------------------RKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELS

Query:  RLERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQED
        RL+R   S  LF SLD+M   L+M +EEKM+F TILL+ED
Subjt:  RLERTRYSQILFRSLDDMRGFLKMIDEEKMDFYTILLQED

A0A5D3BSS7 Retrotransposon protein5.6e-4178.86Show/hide
Query:  MSDENDMEILTMYIKGFNMFQNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDM
        MSDENDMEILTMYIKGFNMFQND                          LRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDM
Subjt:  MSDENDMEILTMYIKGFNMFQNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDM

Query:  RGFLKMIDEEKMDFYTILLQEDS
        RGFLKMIDEEKMDFYTILLQEDS
Subjt:  RGFLKMIDEEKMDFYTILLQEDS

A0A5D3CSY3 Retrotransposon protein2.0e-2252.89Show/hide
Query:  MSDENDMEILTMYIKGFNMFQNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDM
        + D ND+EI TMY +GFNM          ++  G  +L+   +   NDQLRAI +WP VAL+N+TTVRQEVL QL A+ ELSRL+    S+ILF +LDDM
Subjt:  MSDENDMEILTMYIKGFNMFQNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDM

Query:  RGFLKMIDEEKMDFYTILLQE
        RGFL+++++EKMDF T+LL+E
Subjt:  RGFLKMIDEEKMDFYTILLQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGATGAAAATGATATGGAGATCCTCACCATGTACATTAAGGGGTTTAACATGTTCCAAAATGATGTACGGACCTCACAACCTAGGAAGCAGGTGGGTGAGATTGA
GCTAATTCATGAGGCGCTGAAGTATGTGAATGACCAGCTGAGGGCCATTGCTAAGTGGCCTTATGTCGCGCTTCGGAATGATACCACAGTTCGTCAGGAAGTCCTTTACC
AGCTGCGTGCGATGCTTGAACTAAGTAGGTTAGAGAGGACGCGCTACTCGCAGATCCTCTTTCGTAGTTTGGACGACATGCGCGGTTTTCTTAAGATGATTGATGAGGAG
AAGATGGACTTCTATACAATCCTTCTACAAGAAGACTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGATGAAAATGATATGGAGATCCTCACCATGTACATTAAGGGGTTTAACATGTTCCAAAATGATGTACGGACCTCACAACCTAGGAAGCAGGTGGGTGAGATTGA
GCTAATTCATGAGGCGCTGAAGTATGTGAATGACCAGCTGAGGGCCATTGCTAAGTGGCCTTATGTCGCGCTTCGGAATGATACCACAGTTCGTCAGGAAGTCCTTTACC
AGCTGCGTGCGATGCTTGAACTAAGTAGGTTAGAGAGGACGCGCTACTCGCAGATCCTCTTTCGTAGTTTGGACGACATGCGCGGTTTTCTTAAGATGATTGATGAGGAG
AAGATGGACTTCTATACAATCCTTCTACAAGAAGACTCATGA
Protein sequenceShow/hide protein sequence
MSDENDMEILTMYIKGFNMFQNDVRTSQPRKQVGEIELIHEALKYVNDQLRAIAKWPYVALRNDTTVRQEVLYQLRAMLELSRLERTRYSQILFRSLDDMRGFLKMIDEE
KMDFYTILLQEDS