CuGenDBv2

Gene ID	IVF0006038
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Genome location	chr08:8614519..8614779
RNA-Seq Expression	IVF0006038
Synteny	IVF0006038
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032474.1 gag-protease polyprotein [Cucumis melo var. makuwa]

4.14e-47

98.84

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Query:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
        MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Subjt:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

KAA0035392.1 gag-protease polyprotein [Cucumis melo var. makuwa]

2.49e-46

97.67

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Query:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
        MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVDLSLQERANSSK AGRGSTSGQKRKAE
Subjt:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

KAA0036632.1 gag protease polyprotein [Cucumis melo var. makuwa]

9.48e-46

97.67

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Query:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
        MTV+QYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Subjt:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

KAA0041026.1 gag-protease polyprotein [Cucumis melo var. makuwa]

6.68e-48

97.67

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Query:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
        MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVDLSLQERANSSKTAGRGSTSGQKRK E
Subjt:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

TYK13745.1 gag-protease polyprotein [Cucumis melo var. makuwa]

1.86e-48

98.84

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Query:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
        MTV+QYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Subjt:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQU8 Reverse transcriptase

3.8e-36

98.84

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Query:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
        MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Subjt:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

A0A5A7TXM6 Reverse transcriptase

3.8e-36

98.84

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Query:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
        MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Subjt:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

A0A5A7UC07 Reverse transcriptase

1.3e-36

100

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Query:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
        MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Subjt:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

A0A5A7UZ62 Reverse transcriptase

3.8e-36

98.84

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Query:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
        MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Subjt:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

A0A5A7V003 Reverse transcriptase

3.8e-36

98.84

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Query:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
        MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Subjt:  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACAGTGGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACTGAGGCGGCCAGAGCTGATAAGTTTGTTAGAGGCCTCCGACT
GGACATTCAGGGTTTGGTCCGAGCTTTCCGACCCGTTACTCATGCCGATGCACTGCGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCTAACTCGTCTAAGACCGCTG
GTAGAGGTTCGACATCGGGACAGAAGAGGAAGGCTGAGTAG

mRNA sequence

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Protein sequence

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MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

IVF0006038 (gene) of Melon (IVF77) v1 genome