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IVF0006094 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006094
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:18373749..18374336
RNA-Seq ExpressionIVF0006094
SyntenyIVF0006094
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036933.1 uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]2.62e-6865.13Show/hide
Query:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIG----------------------------------------
        MAPDRLDLQ+MEKK SESFKEYAQ+WRDMAAEVQPPLTDKE+TSMFMNTLRAPFY RMIG                                        
Subjt:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIG----------------------------------------

Query:  -----------------KHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP
                         KHKSIFG RKYEQNF SYI+NVSHIPYNSYVPA TVSETPKP+NSNSPRP VQGQGSKTNSDTWRFDPIPMTYTELLP
Subjt:  -----------------KHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP

KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]1.35e-6865.13Show/hide
Query:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIG----------------------------------------
        MAPDRLDLQ++EKK SESFKEYAQ+WRDM AEVQPPLTDKE+TSMFMNTLRAPFY RMIG                                        
Subjt:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIG----------------------------------------

Query:  -----------------KHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP
                         KHKSIFGQRKYEQNF SYISNVSHIPYNSYVPA TVSETPKP+NSNSPRP VQGQGSKTNSDTWRFDPIPMTYTELLP
Subjt:  -----------------KHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]1.04e-6865.13Show/hide
Query:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIG----------------------------------------
        MAPD LDLQ+MEKK SESFKEYAQ+WRDMAAEVQPPLTDKE+TSMFMNTLRAPFY RMIG                                        
Subjt:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIG----------------------------------------

Query:  -----------------KHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP
                         KHKSIFGQRKYEQNF SYISNVSHIPYNSYVPA TVSETPKP+NSNSPRP VQGQGSKTNSDTWRFDPIPMTYTE+LP
Subjt:  -----------------KHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP

KAA0067953.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]8.08e-7389.05Show/hide
Query:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIGKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETP
        MAPDRLDLQQMEKK SESFKEYAQ+WRDMAAEVQPPLTDKE+TSMFMNTLRAPFY RMIGKHKSIFGQRKYEQNF SYISNVS+IPYNSYV A TVSETP
Subjt:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIGKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETP

Query:  KPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELL
        KP+NSNSP+P V+ QGSK NSDTWRFDPIPMTY ELL
Subjt:  KPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELL

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]1.72e-6973.96Show/hide
Query:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMI-------------------------------GKHKSIFGQR
        MAPDRLDLQ+MEKK SESFKEYAQ+WRDMAAEVQPPLTDKE+TSMFMNTLRAPFY RMI                               GKHKSIFGQR
Subjt:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMI-------------------------------GKHKSIFGQR

Query:  KYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP
        KYEQNF SYISNVS+IPYNSYV A TVSETPKP+NSNSP+P VQ QGSKTNSDTWRFDPIPMTYTELLP
Subjt:  KYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein8.7e-5965.13Show/hide
Query:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMI-----------------------------------------
        MAPDRLDLQ++EKK SESFKEYAQ+WRDM AEVQPPLTDKE+TSMFMNTLRAPFY RMI                                         
Subjt:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMI-----------------------------------------

Query:  ----------------GKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP
                        GKHKSIFGQRKYEQNF SYISNVSHIPYNSYVPA TVSETPKP+NSNSPRP VQGQGSKTNSDTWRFDPIPMTYTELLP
Subjt:  ----------------GKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP

A0A5A7T1W2 Retrotrans_gag domain-containing protein1.5e-5865.13Show/hide
Query:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMI-----------------------------------------
        MAPDRLDLQ+MEKK SESFKEYAQ+WRDMAAEVQPPLTDKE+TSMFMNTLRAPFY RMI                                         
Subjt:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMI-----------------------------------------

Query:  ----------------GKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP
                        GKHKSIFG RKYEQNF SYI+NVSHIPYNSYVPA TVSETPKP+NSNSPRP VQGQGSKTNSDTWRFDPIPMTYTELLP
Subjt:  ----------------GKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein6.7e-5965.13Show/hide
Query:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMI-----------------------------------------
        MAPD LDLQ+MEKK SESFKEYAQ+WRDMAAEVQPPLTDKE+TSMFMNTLRAPFY RMI                                         
Subjt:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMI-----------------------------------------

Query:  ----------------GKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP
                        GKHKSIFGQRKYEQNF SYISNVSHIPYNSYVPA TVSETPKP+NSNSPRP VQGQGSKTNSDTWRFDPIPMTYTE+LP
Subjt:  ----------------GKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP

A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein3.8e-6289.05Show/hide
Query:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIGKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETP
        MAPDRLDLQQMEKK SESFKEYAQ+WRDMAAEVQPPLTDKE+TSMFMNTLRAPFY RMIGKHKSIFGQRKYEQNF SYISNVS+IPYNSYV A TVSETP
Subjt:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIGKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETP

Query:  KPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELL
        KP+NSNSP+P V+ QGSK NSDTWRFDPIPMTY ELL
Subjt:  KPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELL

A0A5D3DEB3 Retrotrans_gag domain-containing protein1.8e-5973.96Show/hide
Query:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMI-------------------------------GKHKSIFGQR
        MAPDRLDLQ+MEKK SESFKEYAQ+WRDMAAEVQPPLTDKE+TSMFMNTLRAPFY RMI                               GKHKSIFGQR
Subjt:  MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMI-------------------------------GKHKSIFGQR

Query:  KYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP
        KYEQNF SYISNVS+IPYNSYV A TVSETPKP+NSNSP+P VQ QGSKTNSDTWRFDPIPMTYTELLP
Subjt:  KYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRPLVQGQGSKTNSDTWRFDPIPMTYTELLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAGACCGTTTAGACTTGCAACAGATGGAGAAGAAGCGTTCAGAAAGCTTTAAAGAATATGCTCAACAATGGAGAGATATGGCTGCTGAGGTTCAGCCACCGTT
AACAGACAAAGAAATTACATCTATGTTTATGAATACCTTGCGGGCTCCATTCTATGGGCGAATGATTGGGAAGCACAAATCAATTTTTGGTCAAAGAAAATATGAGCAAA
ACTTTTCGTCATATATAAGCAATGTTTCTCATATCCCTTATAATAGCTATGTACCAGCCCCTACAGTCTCTGAAACTCCAAAACCCATTAACTCAAATTCTCCACGACCA
TTGGTACAGGGTCAAGGTAGCAAAACCAATTCAGATACATGGCGGTTTGATCCGATTCCCATGACTTATACAGAGCTTTTACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAGACCGTTTAGACTTGCAACAGATGGAGAAGAAGCGTTCAGAAAGCTTTAAAGAATATGCTCAACAATGGAGAGATATGGCTGCTGAGGTTCAGCCACCGTT
AACAGACAAAGAAATTACATCTATGTTTATGAATACCTTGCGGGCTCCATTCTATGGGCGAATGATTGGGAAGCACAAATCAATTTTTGGTCAAAGAAAATATGAGCAAA
ACTTTTCGTCATATATAAGCAATGTTTCTCATATCCCTTATAATAGCTATGTACCAGCCCCTACAGTCTCTGAAACTCCAAAACCCATTAACTCAAATTCTCCACGACCA
TTGGTACAGGGTCAAGGTAGCAAAACCAATTCAGATACATGGCGGTTTGATCCGATTCCCATGACTTATACAGAGCTTTTACCTTAA
Protein sequenceShow/hide protein sequence
MAPDRLDLQQMEKKRSESFKEYAQQWRDMAAEVQPPLTDKEITSMFMNTLRAPFYGRMIGKHKSIFGQRKYEQNFSSYISNVSHIPYNSYVPAPTVSETPKPINSNSPRP
LVQGQGSKTNSDTWRFDPIPMTYTELLP