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IVF0006122 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006122
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:7758308..7758538
RNA-Seq ExpressionIVF0006122
SyntenyIVF0006122
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032827.1 putative retrotransposon protein [Cucumis melo var. makuwa]4.22e-2371.23Show/hide
Query:  RSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKE
        +S  ELH MLK A LNIKSS+EVLMVQKGKN KKR  DQG G  KV +K S+VDA   PRL PKPKEPKPPKE
Subjt:  RSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKE

KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]5.47e-2878.95Show/hide
Query:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG
        +E+SLT+LH MLK A+LNIK S EVLMVQKGKNPKKRERDQG GK KVVVKAS+VDA   PR  PKPKEPKPPKEG
Subjt:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG

KAA0066400.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.17e-42100Show/hide
Query:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG
        MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG
Subjt:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.28e-2572.37Show/hide
Query:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG
        M++SLTELH MLK  +LNIKSS +VLM+QKGKNPKK+E DQG GKGKV VK S+VDA  APR   K KEPKPPKEG
Subjt:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG

TYK07553.1 putative retrotransposon protein [Cucumis melo var. makuwa]1.03e-2383.87Show/hide
Query:  AELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG
        A+LNIKSS EVLMVQKGKNPKKRERDQG GK KVVVKAS+VDA   PR  PKPKEPKPPKEG
Subjt:  AELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG

TrEMBL top hitse value%identityAlignment
A0A5A7UN47 Uncharacterized protein1.8e-2178.95Show/hide
Query:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG
        +E+SLT+LH MLK A+LNIK S EVLMVQKGKNPKKRERDQG GK KVVVKAS+VDA   PR  PKPKEPKPPKEG
Subjt:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-1872.37Show/hide
Query:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG
        M++SLTELH MLK  +LNIKSS +VLM+QKGKNPKK+E DQG GKGKV VK S+VDA  APR   K KEPKPPKEG
Subjt:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG

A0A5D3BP05 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-31100Show/hide
Query:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG
        MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG
Subjt:  MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG

A0A5D3C6L2 Putative retrotransposon protein3.5e-1783.87Show/hide
Query:  AELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG
        A+LNIKSS EVLMVQKGKNPKKRERDQG GK KVVVKAS+VDA   PR  PKPKEPKPPKEG
Subjt:  AELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG

A0A5D3E2P1 Putative retrotransposon protein1.0e-1671.23Show/hide
Query:  RSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKE
        +S  ELH MLK A LNIKSS+EVLMVQKGKN KKR  DQG G  KV +K S+VDA   PRL PKPKEPKPPKE
Subjt:  RSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGGAGTTTGACTGAGCTGCATGAGATGCTGAAGATCGCTGAATTGAACATCAAGTCCAGTTATGAGGTTTTAATGGTGCAAAAAGGGAAGAATCCCAAGAAAAG
GGAACGAGATCAAGGAAATGGTAAGGGGAAAGTTGTTGTCAAGGCATCAAGAGTTGATGCTTCTACTGCACCAAGGCTGATACCCAAACCTAAAGAGCCTAAGCCACCCA
AGGAAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGGAGTTTGACTGAGCTGCATGAGATGCTGAAGATCGCTGAATTGAACATCAAGTCCAGTTATGAGGTTTTAATGGTGCAAAAAGGGAAGAATCCCAAGAAAAG
GGAACGAGATCAAGGAAATGGTAAGGGGAAAGTTGTTGTCAAGGCATCAAGAGTTGATGCTTCTACTGCACCAAGGCTGATACCCAAACCTAAAGAGCCTAAGCCACCCA
AGGAAGGATAA
Protein sequenceShow/hide protein sequence
MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG