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IVF0006182 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006182
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr12:16202635..16203331
RNA-Seq ExpressionIVF0006182
SyntenyIVF0006182
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025655.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.19e-8085.71Show/hide
Query:  KKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQMEL
        +KF+DVHRRDVVFDIGDWVYLKLQPYRQ+SVAKRRCDKLSP+YFG YMV+GRVGEVAYLLDL +TAKIHPVFHVSQLKRAVGDKH IQ DI+ ++DQMEL
Subjt:  KKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQMEL

Query:  VLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV
        V+EPD V+QLRWNDAERDWEYLVHWKDQ SHE 
Subjt:  VLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV

KAA0031735.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.30e-8491.04Show/hide
Query:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME
        MKKF DVHRR+VVFDIGDWVYLKLQPYRQQSVAKRRCDKL P+YFG YMVLGRVGEVAYLLDL E AKIHPVFHVSQLKRAVGDKH IQ DI+ALNDQME
Subjt:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME

Query:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV
        LVL PDQVTQLRWNDAERDWEYLVHWKDQPSHE 
Subjt:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV

KAA0039535.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.72e-7785.71Show/hide
Query:  KKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQMEL
        KKF+DVHRRDVVFDIGDWVYLKLQPYRQ+SVAKRRCDKLSP+YFG  MV+GRVGEVAYLLDL +TAKIHPVFHVSQLKRAVGDKH IQ DI+ +NDQMEL
Subjt:  KKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQMEL

Query:  VLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV
        V+EPD V+QLR NDAERDWEYLVHWKDQP HE 
Subjt:  VLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV

KAA0043202.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.73e-103100Show/hide
Query:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME
        MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME
Subjt:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME

Query:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEVHGNPMSRL
        LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEVHGNPMSRL
Subjt:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEVHGNPMSRL

KAA0047603.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.38e-7986.57Show/hide
Query:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME
        MKKF++VHR DVVFDIGDWVYLKLQPYR+QSV KR  DKLSPRYFG YM+LGRVGEVAYLLD+ ETAKIHPVFHVSQLKRAVGDKHHIQ DI  LNDQME
Subjt:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME

Query:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV
        L+LEP+ VTQLRWNDAERDWEYLV WKDQPSHEV
Subjt:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV

TrEMBL top hitse value%identityAlignment
A0A5A7SNK3 Putative retroelement pol polyprotein2.1e-6386.47Show/hide
Query:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME
        MKKF+DVHRR+VVFDIGDWVYLKLQPYRQQ VAKRRCDKLSP+YFG +MV+GRVGEVAYLLDL +TAKIH VFHVSQLKR VGDKH IQ DI+ALN++ME
Subjt:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME

Query:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHE
        L+LEPD+VTQLRWNDAERDWEYLVHWKDQPSHE
Subjt:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHE

A0A5A7SRH1 Ty3-gypsy retrotransposon protein5.8e-6691.73Show/hide
Query:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME
        MKKF DVHRR+VVFDIGDWVYLKLQPYRQQSVAKRRCDKL P+YFG YMVLGRVGEVAYLLDL E AKIHPVFHVSQLKRAVGDKH IQ DI+ALNDQME
Subjt:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME

Query:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHE
        LVL PDQVTQLRWNDAERDWEYLVHWKDQPSHE
Subjt:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHE

A0A5A7TIR3 Ty3-gypsy retrotransposon protein1.7e-78100Show/hide
Query:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME
        MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME
Subjt:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME

Query:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEVHGNPMSRL
        LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEVHGNPMSRL
Subjt:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEVHGNPMSRL

A0A5A7TVM7 Ty3-gypsy retrotransposon protein2.7e-6386.57Show/hide
Query:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME
        MKKF++VHR DVVFDIGDWVYLKLQPYR+QSV KR  DKLSPRYFG YM+LGRVGEVAYLLD+ ETAKIHPVFHVSQLKRAVGDKHHIQ DI  LNDQME
Subjt:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME

Query:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV
        L+LEP+ VTQLRWNDAERDWEYLV WKDQPSHEV
Subjt:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV

A0A5D3BVC8 Ty3-gypsy retrotransposon protein8.4e-6587.31Show/hide
Query:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME
        MKKF+DVHRRDVVFDIGDWVYLKLQPYRQ+SVAKRRCDKLSP+YFG YMV+GRVGEV YLLDL +TAKIHPVFHVSQLKRAVGDKH IQ DI+ +NDQME
Subjt:  MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQME

Query:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV
        LV+EPD V+QLRWNDAERDWEYLVHWKDQP HEV
Subjt:  LVLEPDQVTQLRWNDAERDWEYLVHWKDQPSHEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAATTTTCCGATGTACACCGGCGTGATGTGGTGTTTGACATTGGAGACTGGGTATATTTAAAGTTACAGCCCTATAGACAGCAGTCGGTAGCGAAGAGGCGTTG
TGACAAGCTATCTCCCAGATATTTTGGGGCTTATATGGTGCTTGGTAGGGTCGGCGAGGTAGCTTACTTGTTGGACCTTTCGGAGACTGCCAAAATACATCCGGTTTTCC
ACGTTTCGCAACTAAAAAGGGCAGTGGGTGACAAACACCACATCCAATCGGATATAGCAGCGCTTAATGATCAGATGGAGTTAGTTTTGGAGCCCGACCAGGTGACCCAA
CTTCGTTGGAATGATGCTGAAAGAGATTGGGAGTATTTAGTCCACTGGAAAGATCAACCGAGTCATGAAGTACATGGGAATCCTATGTCACGCTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAATTTTCCGATGTACACCGGCGTGATGTGGTGTTTGACATTGGAGACTGGGTATATTTAAAGTTACAGCCCTATAGACAGCAGTCGGTAGCGAAGAGGCGTTG
TGACAAGCTATCTCCCAGATATTTTGGGGCTTATATGGTGCTTGGTAGGGTCGGCGAGGTAGCTTACTTGTTGGACCTTTCGGAGACTGCCAAAATACATCCGGTTTTCC
ACGTTTCGCAACTAAAAAGGGCAGTGGGTGACAAACACCACATCCAATCGGATATAGCAGCGCTTAATGATCAGATGGAGTTAGTTTTGGAGCCCGACCAGGTGACCCAA
CTTCGTTGGAATGATGCTGAAAGAGATTGGGAGTATTTAGTCCACTGGAAAGATCAACCGAGTCATGAAGTACATGGGAATCCTATGTCACGCTTGTAAAACAATATCCT
GATTTCCACCTTGAGGACAAGGTGGCTCTTCTCCATGGGGGTATTGCTAGGCCTTCAATCACATAAGTTTATCAAAGGAAAAGGAAGAAGGGTAAGAAGGGTATTTCAGC
ATAGATAATATAGTAGTTAGAATTGCCAGCGGTCCTAAGTGTACGTGGCAGCAGCAGGAGGAGACTATATATTGGGAAGTTTTGGGCTAGGGTTAGGCATCGAAATATTT
GGAGTATTTTGAATGGACATGCTTGTTCATTAGGGAG
Protein sequenceShow/hide protein sequence
MKKFSDVHRRDVVFDIGDWVYLKLQPYRQQSVAKRRCDKLSPRYFGAYMVLGRVGEVAYLLDLSETAKIHPVFHVSQLKRAVGDKHHIQSDIAALNDQMELVLEPDQVTQ
LRWNDAERDWEYLVHWKDQPSHEVHGNPMSRL