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IVF0006185 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006185
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:7261620..7261802
RNA-Seq ExpressionIVF0006185
SyntenyIVF0006185
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051269.1 uncharacterized protein E6C27_scaffold2143G00270 [Cucumis melo var. makuwa]7.29e-0740Show/hide
Query:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVN-----KRQDVSCAADGYGLKMKGKVD
        MAQ+Q+EER+   EKEI+ LK+++ ++ K++E+L D++      K ++ S  +DG  +KMKGK++
Subjt:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVN-----KRQDVSCAADGYGLKMKGKVD
KAA0055486.1 hypothetical protein E6C27_scaffold221G00630 [Cucumis melo var. makuwa]1.59e-2589.83Show/hide
Query:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVNKRQDVSCAADGYGLKMKGKV
        MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVNKRQDVSCAADG G    G V
Subjt:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVNKRQDVSCAADGYGLKMKGKV
TYK05582.1 retrotransposon protein [Cucumis melo var. makuwa]8.41e-0739.39Show/hide
Query:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVN------KRQDVSCAADGYGLKMKGKVD
        MAQ+Q+EER++  EKE+L LK+++ ++ K+VE+L D++       K+++    +DG  +K+KGK+D
Subjt:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVN------KRQDVSCAADGYGLKMKGKVD
XP_016899799.1 PREDICTED: uncharacterized protein LOC107990667 [Cucumis melo]7.24e-0754Show/hide
Query:  LGLKKLIFDLTKSVEKLLDDVN-------KRQDVSCAADGYGLKMKGKVD
        +GLK++I DLT+SVEKL D+V        KR++ SCA+D +GLK+KGKV+
Subjt:  LGLKKLIFDLTKSVEKLLDDVN-------KRQDVSCAADGYGLKMKGKVD
XP_031744430.1 uncharacterized protein LOC116405043 [Cucumis sativus]3.19e-0741.54Show/hide
Query:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVN-----KRQDVSCAADGYGLKMKGKVD
        MAQ+Q+EERM+  EKE+L +K+++ ++ KS+E+L +++      K++D S  +DG  +K+KGKV+
Subjt:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVN-----KRQDVSCAADGYGLKMKGKVD
TrEMBL top hitse value%identityAlignment
A0A1S4DUY8 uncharacterized protein LOC1079906673.5e-0454Show/hide
Query:  LGLKKLIFDLTKSVEKLLDD-------VNKRQDVSCAADGYGLKMKGKVD
        +GLK++I DLT+SVEKL D+       V KR++ SCA+D +GLK+KGKV+
Subjt:  LGLKKLIFDLTKSVEKLLDD-------VNKRQDVSCAADGYGLKMKGKVD
A0A5A7TA55 Retrotransposon protein3.5e-0454Show/hide
Query:  LGLKKLIFDLTKSVEKLLDD-------VNKRQDVSCAADGYGLKMKGKVD
        +GLK++I DLT+SVEKL D+       V KR++ SCA+D +GLK+KGKV+
Subjt:  LGLKKLIFDLTKSVEKLLDD-------VNKRQDVSCAADGYGLKMKGKVD
A0A5A7UMJ2 Uncharacterized protein4.2e-1889.83Show/hide
Query:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVNKRQDVSCAADGYGLKMKGKV
        MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVNKRQDVSCAADG G    G V
Subjt:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVNKRQDVSCAADGYGLKMKGKV
A0A5D3BVG6 Retrotransposon protein2.7e-0440.91Show/hide
Query:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDV------NKRQDVSCAADGYGLKMKGKVD
        MAQ+Q+EER++  EKEIL LK+++ ++ K+VE+L D++       K+++    +DG  +K+KGK+D
Subjt:  MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDV------NKRQDVSCAADGYGLKMKGKVD
A0A5D3D8B5 Retrotransposon protein3.5e-0454Show/hide
Query:  LGLKKLIFDLTKSVEKLLDD-------VNKRQDVSCAADGYGLKMKGKVD
        +GLK++I DLT+SVEKL D+       V KR++ SCA+D +GLK+KGKV+
Subjt:  LGLKKLIFDLTKSVEKLLDD-------VNKRQDVSCAADGYGLKMKGKVD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACAGAAACAACTAGAGGAAAGGATGAAGATGGGTGAGAAGGAAATCTTGGGATTAAAGAAATTGATCTTCGACCTAACTAAAAGCGTGGAGAAATTGTTGGATGA
TGTTAACAAACGTCAAGATGTATCTTGTGCGGCTGATGGGTATGGACTGAAAATGAAAGGCAAGGTGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACAGAAACAACTAGAGGAAAGGATGAAGATGGGTGAGAAGGAAATCTTGGGATTAAAGAAATTGATCTTCGACCTAACTAAAAGCGTGGAGAAATTGTTGGATGA
TGTTAACAAACGTCAAGATGTATCTTGTGCGGCTGATGGGTATGGACTGAAAATGAAAGGCAAGGTGGACTAG
Protein sequenceShow/hide protein sequence
MAQKQLEERMKMGEKEILGLKKLIFDLTKSVEKLLDDVNKRQDVSCAADGYGLKMKGKVD