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IVF0006281 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006281
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPHD finger protein ALFIN-LIKE 3-like
Genome locationchr10:18011519..18011698
RNA-Seq ExpressionIVF0006281
SyntenyIVF0006281
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0042393 - histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR011011 - Zinc finger, FYVE/PHD-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR045104 - Alfin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032497.1 PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa]3.66e-2994.34Show/hide
Query:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
        RQSQ  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYE WFHGKFVV
Subjt:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV

KAA0067842.1 PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa]5.18e-3389.83Show/hide
Query:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
        MQGTCARQSQA +EVETYEED+DEH D LCRACGENYASDEFWICCDIYE WFHGKFVV
Subjt:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV

TYJ98373.1 PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa]2.76e-2892.45Show/hide
Query:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
        RQS   EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYE WFHGKFVV
Subjt:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV

TYK29017.1 PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa]8.00e-39100Show/hide
Query:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
        MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
Subjt:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV

XP_016903323.1 PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo]1.79e-3389.83Show/hide
Query:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
        MQGTCARQSQA +EVETYEED+DEH D LCRACGENYASDEFWICCDIYE WFHGKFVV
Subjt:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV

TrEMBL top hitse value%identityAlignment
A0A1S4E514 PHD finger protein ALFIN-LIKE 3-like2.3e-2489.83Show/hide
Query:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
        MQGTCARQSQA +EVETYEED+DEH D LCRACGENYASDEFWICCDIYE WFHGKFVV
Subjt:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV

A0A5A7ST15 PHD finger protein ALFIN-LIKE 3-like isoform X23.6e-2294.34Show/hide
Query:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
        RQSQ  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYE WFHGKFVV
Subjt:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV

A0A5A7VHJ0 PHD finger protein ALFIN-LIKE 3-like2.3e-2489.83Show/hide
Query:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
        MQGTCARQSQA +EVETYEED+DEH D LCRACGENYASDEFWICCDIYE WFHGKFVV
Subjt:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV

A0A5D3BGJ5 PHD finger protein ALFIN-LIKE 3-like isoform X21.4e-2192.45Show/hide
Query:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
        RQS   EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYE WFHGKFVV
Subjt:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV

A0A5D3DYQ4 PHD finger protein ALFIN-LIKE 3-like4.4e-28100Show/hide
Query:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
        MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV
Subjt:  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV

SwissProt top hitse value%identityAlignment
O81488 PHD finger protein ALFIN-LIKE 45.1e-1361.54Show/hide
Query:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV
        +  +  EE    EEDEDE G+T C ACGE+YA+DEFWICCD+ E WFHGK V
Subjt:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV

Q5XEM9 PHD finger protein ALFIN-LIKE 52.1e-1471.74Show/hide
Query:  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV
        E  E  +EDEDEHG+TLC ACG+NYASDEFWICCD+ E WFHG+ V
Subjt:  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV

Q9FFF5 PHD finger protein ALFIN-LIKE 17.8e-1458.49Show/hide
Query:  QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV
        Q+++T ++  E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E W+HGK V
Subjt:  QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV

Q9M2B4 PHD finger protein ALFIN-LIKE 31.5e-1255.17Show/hide
Query:  QGTCARQSQATEEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV
        +G  ++  Q  EE E   E+DED+HG+TLC ACG++  +DEFWICCD+ E WFHGK V
Subjt:  QGTCARQSQATEEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV

Q9SRM4 PHD finger protein ALFIN-LIKE 21.9e-1263.04Show/hide
Query:  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV
        EE    EE+EDEHGDTLC +CG +Y ++EFWICCD+ E W+HGK V
Subjt:  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV

Arabidopsis top hitse value%identityAlignment
AT3G42790.1 alfin-like 31.0e-1355.17Show/hide
Query:  QGTCARQSQATEEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV
        +G  ++  Q  EE E   E+DED+HG+TLC ACG++  +DEFWICCD+ E WFHGK V
Subjt:  QGTCARQSQATEEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV

AT5G05610.1 alfin-like 15.6e-1558.49Show/hide
Query:  QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV
        Q+++T ++  E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E W+HGK V
Subjt:  QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV

AT5G05610.2 alfin-like 15.6e-1558.49Show/hide
Query:  QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV
        Q+++T ++  E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E W+HGK V
Subjt:  QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV

AT5G20510.1 alfin-like 51.5e-1571.74Show/hide
Query:  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV
        E  E  +EDEDEHG+TLC ACG+NYASDEFWICCD+ E WFHG+ V
Subjt:  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV

AT5G26210.1 alfin-like 43.6e-1461.54Show/hide
Query:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV
        +  +  EE    EEDEDE G+T C ACGE+YA+DEFWICCD+ E WFHGK V
Subjt:  RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTA
TGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTA
TGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA
Protein sequenceShow/hide protein sequence
MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV