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IVF0006301 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006301
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr12:17882241..17883373
RNA-Seq ExpressionIVF0006301
SyntenyIVF0006301
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026125.1 hypothetical protein E6C27_scaffold19G00740 [Cucumis melo var. makuwa]1.45e-1432.12Show/hide
Query:  AKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMIN-----PTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTS--
        A++F +DK GRK  IL  +G +K G  SFL++I      PT  I  ++R     +       S SSDSD+  +SYA+  SD   S     ++R  STS  
Subjt:  AKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMIN-----PTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTS--

Query:  ----PTRQGN---------------------KKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEK
            P  Q N                      +  KL++A+IKVRYNY+ F+PAS+ I D+ G++F++  V P   +  +E  +++H     K
Subjt:  ----PTRQGN---------------------KKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEK

KAA0045526.1 hypothetical protein E6C27_scaffold243G00120 [Cucumis melo var. makuwa]2.97e-1543.48Show/hide
Query:  IPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH---------------------------AVLLEKLKLKSKIVINEPFPSNENLIVAKNINDKESS
        + +++ IKD+NG+ FVVQ VT EN+K L E D+KIH                           AV  EK+KLKSKIVINE   S+ENL +AK I+DK S 
Subjt:  IPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH---------------------------AVLLEKLKLKSKIVINEPFPSNENLIVAKNINDKESS

Query:  ---KLDIKVASRKEKEIEKEKGLVRSIDEDLERDTHLM
             D ++A++KEK   KE  L++SI+ED+E D+H M
Subjt:  ---KLDIKVASRKEKEIEKEKGLVRSIDEDLERDTHLM

KAA0047093.1 hypothetical protein E6C27_scaffold466G00600 [Cucumis melo var. makuwa]7.15e-9582.11Show/hide
Query:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTSPTRQ--
        MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTSPTRQ  
Subjt:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTSPTRQ--

Query:  --------------------------------GNKKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH
                                        GNKKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH
Subjt:  --------------------------------GNKKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH

KAA0055987.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.06e-1933.2Show/hide
Query:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSS----GRERSLSTSPT
        +A+VF +D+ GRK C+L  +G    G VSFLSMI P VE EPK+R P+      R   +  SDSD+ R+SYA+V S+GY SDSS+     ++RS+   P 
Subjt:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSS----GRERSLSTSPT

Query:  RQG-----------------------------------------------------------NKKQN-------------------------KLMEARIK
        +                                                              K QN                          L+EA+IK
Subjt:  RQG-----------------------------------------------------------NKKQN-------------------------KLMEARIK

Query:  VRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH
        VRYNY  FIPA++ IKD+NG+SFVV  VT  + K L E D+KIH
Subjt:  VRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH

TYK27679.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.81e-1933.2Show/hide
Query:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSS----GRERSLSTSPT
        +A+VF +D+ GRK C+L  +G    G VSFLSMI P VE EPK+R P+      R   +  SDSD+ R+SYA+V S+GY SDSS+     ++RS+   P 
Subjt:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSS----GRERSLSTSPT

Query:  RQG-----------------------------------------------------------NKKQN-------------------------KLMEARIK
                                                                       K QN                          L+EA+IK
Subjt:  RQG-----------------------------------------------------------NKKQN-------------------------KLMEARIK

Query:  VRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH
        VRYNY  FIPA++ IKD+NG+SFVV  VT  + K L E D+KIH
Subjt:  VRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH

TrEMBL top hitse value%identityAlignment
A0A5A7SNW5 Uncharacterized protein1.9e-1331.9Show/hide
Query:  AKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMIN-----PTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTS--
        A++F +DK GRK  IL  +G +K G  SFL++I      PT  I  ++R     +       S SSDSD+  +SYA+  SD   S     ++R  STS  
Subjt:  AKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMIN-----PTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTS--

Query:  ----PTRQGN---------------------KKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEKLKLKSKI
            P  Q N                      +  KL++A+IKVRYNY+ F+PAS+ I D+ G++F++  V P   +  +E  +++H       K K+  
Subjt:  ----PTRQGN---------------------KKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEKLKLKSKI

Query:  VINEPFPSNE
          +E  PS E
Subjt:  VINEPFPSNE

A0A5A7TU48 Uncharacterized protein1.5e-7482.11Show/hide
Query:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTSPTRQ--
        MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTSPTRQ  
Subjt:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTSPTRQ--

Query:  --------------------------------GNKKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH
                                        GNKKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH
Subjt:  --------------------------------GNKKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH

A0A5A7UN08 LINE-1 retrotransposable element ORF2 protein9.1e-1629.36Show/hide
Query:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSS----GRERSLSTSPT
        +A+VF +D+ GRK C+L  +G    G VSFLSMI P VE EPK+R P+      R   +  SDSD+ R+SYA+V S+GY SDSS+     ++RS+   P 
Subjt:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSS----GRERSLSTSPT

Query:  RQG-----------------------------------------------------------NKKQN-------------------------KLMEARIK
        +                                                              K QN                          L+EA+IK
Subjt:  RQG-----------------------------------------------------------NKKQN-------------------------KLMEARIK

Query:  VRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEKLKLKSKIVINEPFPSNENLIVAKNINDKESSKLDIKVASRKEKEIEKEKG
        VRYNY  FIPA++ IKD+NG+SFVV  VT  + K L E D+KIH          S  +I E   ++     A+  N     +  + +AS ++  + KE+ 
Subjt:  VRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEKLKLKSKIVINEPFPSNENLIVAKNINDKESSKLDIKVASRKEKEIEKEKG

Query:  LVRSIDEDLE-------RDTHLMLANT
             ++D +       +D +L LA T
Subjt:  LVRSIDEDLE-------RDTHLMLANT

A0A5D3BSG0 Uncharacterized protein2.1e-1243.48Show/hide
Query:  IPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH---------------------------AVLLEKLKLKSKIVINEPFPSNENLIVAKNIND---K
        + +++ IKD+NG+ FVVQ VT EN+K L E D+KIH                           AV  EK+KLKSKIVINE   S+ENL +AK I+D   K
Subjt:  IPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH---------------------------AVLLEKLKLKSKIVINEPFPSNENLIVAKNIND---K

Query:  ESSKLDIKVASRKEKEIEKEKGLVRSIDEDLERDTHLM
         S   D ++A++KEK   KE  L++SI+ED+E D+H M
Subjt:  ESSKLDIKVASRKEKEIEKEKGLVRSIDEDLERDTHLM

A0A5D3DW73 LINE-1 retrotransposable element ORF2 protein1.6e-1529.97Show/hide
Query:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSS----GRERSLSTSP-
        +A+VF +D+ GRK C+L  +G    G VSFLSMI P VE EPK+R P+      R   +  SDSD+ R+SYA+V S+GY SDSS+     ++RS+   P 
Subjt:  MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSS----GRERSLSTSP-

Query:  ------TRQ----------------------------------------------------GNKKQN-------------------------KLMEARIK
              TR+                                                      K QN                          L+EA+IK
Subjt:  ------TRQ----------------------------------------------------GNKKQN-------------------------KLMEARIK

Query:  VRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEKLKLKSKIVINEPFPSNENLIVAKNINDKESSKLDIKVASRKEKEIEKEKG
        VRYNY  FIPA++ IKD+NG+SFVV  VT  + K L E D+KIH          S  +I E   ++     A+  N     +  + +AS ++  + KE+ 
Subjt:  VRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEKLKLKSKIVINEPFPSNENLIVAKNINDKESSKLDIKVASRKEKEIEKEKG

Query:  LVRSIDEDLE-------RDTHLMLANT
             ++D +       +D +L LA T
Subjt:  LVRSIDEDLE-------RDTHLMLANT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAAGTTTTCATAGTTGACAAACATGGTCGCAAAAGTTGCATACTAGATCATAAAGGACTAGAGAAGAGTGGATTGGTTTCCTTTCTATCCATGATCAATCCAAC
GGTTGAAATAGAACCAAAGCTGAGGCCTCCAATTGCTGGTCGAAAAGATACCAGGAAGTTTTACTCTTCATCATCAGACTCAGATACATTAAGGAGGTCTTATGCCCAGG
TTTATTCTGATGGATACCCAAGTGATTCGTCTTCAGGAAGAGAAAGGAGTCTCTCTACAAGCCCAACTAGACAGGGAAACAAAAAACAGAACAAACTTATGGAAGCAAGA
ATCAAAGTTAGATATAACTACTCAGATTTTATCCCAGCCAGTGTTTGCATCAAAGATGAAAATGGGAACTCTTTTGTGGTGCAAGTTGTCACTCCTGAAAATGAGAAATT
GCTCATTGAAAGTGATATCAAAATCCATGCAGTCCTACTGGAGAAACTCAAGCTAAAAAGCAAGATAGTGATTAATGAGCCCTTTCCATCCAATGAAAATCTCATAGTAG
CCAAGAACATTAATGATAAAGAATCTTCAAAATTAGATATAAAGGTTGCCAGCAGGAAAGAGAAAGAAATTGAGAAGGAGAAAGGCTTAGTGAGAAGCATTGATGAAGAT
TTAGAAAGAGATACTCATTTAATGCTGGCAAATACAAATCTTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAAGTTTTCATAGTTGACAAACATGGTCGCAAAAGTTGCATACTAGATCATAAAGGACTAGAGAAGAGTGGATTGGTTTCCTTTCTATCCATGATCAATCCAAC
GGTTGAAATAGAACCAAAGCTGAGGCCTCCAATTGCTGGTCGAAAAGATACCAGGAAGTTTTACTCTTCATCATCAGACTCAGATACATTAAGGAGGTCTTATGCCCAGG
TTTATTCTGATGGATACCCAAGTGATTCGTCTTCAGGAAGAGAAAGGAGTCTCTCTACAAGCCCAACTAGACAGGGAAACAAAAAACAGAACAAACTTATGGAAGCAAGA
ATCAAAGTTAGATATAACTACTCAGATTTTATCCCAGCCAGTGTTTGCATCAAAGATGAAAATGGGAACTCTTTTGTGGTGCAAGTTGTCACTCCTGAAAATGAGAAATT
GCTCATTGAAAGTGATATCAAAATCCATGCAGTCCTACTGGAGAAACTCAAGCTAAAAAGCAAGATAGTGATTAATGAGCCCTTTCCATCCAATGAAAATCTCATAGTAG
CCAAGAACATTAATGATAAAGAATCTTCAAAATTAGATATAAAGGTTGCCAGCAGGAAAGAGAAAGAAATTGAGAAGGAGAAAGGCTTAGTGAGAAGCATTGATGAAGAT
TTAGAAAGAGATACTCATTTAATGCTGGCAAATACAAATCTTATATAA
Protein sequenceShow/hide protein sequence
MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTSPTRQGNKKQNKLMEAR
IKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEKLKLKSKIVINEPFPSNENLIVAKNINDKESSKLDIKVASRKEKEIEKEKGLVRSIDED
LERDTHLMLANTNLI