CuGenDBv2

Gene ID	IVF0006318
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mitochondrial transcription termination factor family protein isoform 2
Genome location	chr03:717336..718358
RNA-Seq Expression	IVF0006318
Synteny	IVF0006318
Gene Ontology terms	GO:0006353 - DNA-templated transcription, termination (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0042646 - plastid nucleoid (cellular component) GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domains	IPR003690 - Transcription termination factor, mitochondrial/chloroplastic IPR038538 - MTERF superfamily, mitochondrial/chloroplastic

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037010.1 Mitochondrial transcription termination factor family protein isoform 2 [Cucumis melo var. makuwa]

2.85e-135

100

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPK

XP_004138649.1 uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus]

1.68e-153

97.69

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQNPYPRKWE+CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDR+KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
Subjt:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

XP_008441218.1 PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo]

1.28e-157

100

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
Subjt:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

XP_011649898.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus]

1.88e-153

97.69

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQNPYPRKWE+CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDR+KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
Subjt:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

XP_038885056.1 uncharacterized protein LOC120075592 [Benincasa hispida]

7.92e-143

92.13

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSL SPISTIDSATRFCCSTR  ATAISDA  SNVSFSYHPAKH IK VRRQ PYP KWE+CS+TQVESL LSDED+KTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAF HIHSPYWGEDRKK+VPNIE VNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGY VD
Subjt:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQN8 Uncharacterized protein

1.8e-119

97.69

Show/hide

Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQNPYPRKWE+CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDR+KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
Subjt:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

A0A1S3B2X0 uncharacterized protein LOC103485418

1.3e-122

100

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
Subjt:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

A0A5A7T0X2 Mitochondrial transcription termination factor family protein isoform 2

3.9e-106

100

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPK

A0A6J1FK31 uncharacterized protein LOC111444935

2.8e-104

86.11

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Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSL SPIST+DS TR C ST C  TA S+AVCSNVSFSY PAK+ I  VRRQ+PYPRKWE+ S+ QVESL+LSDEDKKTWEACRQALS+FSFS EEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDRKK+VPNI+ VN+ILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLL+KEWGIQGKSLR+LLLRNPKVLGY VD
Subjt:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

A0A6J1JTP6 uncharacterized protein LOC111489650

2.8e-104

86.11

Show/hide

Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ
        MLGKSL SPIST+DS TR C ST C  TA S AVCSNVSFSY PAK+ I  VRRQ+PYPRKWE+ S++QVESL+LSD+DKKTWEACRQALS+FSFS EEQ
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD
        DKMLGKAFGHIHSPYWGEDRKK+VPNI+ VN+ILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLL+KEWGIQGKSLRNLLLRNPKVLGY VD
Subjt:  DKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVD

Query:  CKGDCIAKCTRCWVRF
        CKGDCIAKCTRCWVRF
Subjt:  CKGDCIAKCTRCWVRF

SwissProt top hits

e value

%identity

Alignment

Q6AUK6 Transcription termination factor MTERF4, chloroplastic

9.2e-04

30.43

Show/hide

Query:  EIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG
        +I+   +E+L  +GL    ++++++K P VLG  LE ++K N++ L  E+G++ ++L  ++ + P +LG
Subjt:  EIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG

Q9ZT96 Transcription termination factor MTERF4, chloroplastic

1.1e-04

30.88

Show/hide

Query:  IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG
        I+  ++EYL  LG+     ++L++K P +LG  L+  +K NVQ+L +++ ++  SL +++ + P+++G
Subjt:  IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG

Arabidopsis top hits

e value

%identity

Alignment

AT4G02990.1 Mitochondrial transcription termination factor family protein

7.7e-06

30.88

Show/hide

Query:  IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG
        I+  ++EYL  LG+     ++L++K P +LG  L+  +K NVQ+L +++ ++  SL +++ + P+++G
Subjt:  IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLG

AT4G09620.1 Mitochondrial transcription termination factor family protein

2.3e-66

58.06

Show/hide

Query:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEV-CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEE
        M+G SLASP++T+ SA  F  S     T  ++ +   ++ SYH       GVR  +    KW V CS+TQVE+   S+ED   WE C++ALS F FSVEE
Subjt:  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEV-CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEE

Query:  QDKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYV
        +DK+LGKAFGHIHSPYW E+R K+ P +E +N ILE+LR+LGLS++DL K++KKFPEVLGC+LE+E+K N+ +L+ +WGI GK LRNLLLRNPKVLGY V
Subjt:  QDKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYV

Query:  DCKGDCIAKCTRCWVRF
        DCKGDC+A+CTRCWVRF
Subjt:  DCKGDCIAKCTRCWVRF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTAGGAAAGTCGTTGGCATCCCCTATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCAAA
TGTGAGTTTCTCCTATCATCCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAGTCTGTTCATCTACTCAAGTTGAAAGCTTAA
TATTAAGTGATGAAGATAAGAAGACATGGGAAGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCAC
ATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCT
CTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCAC
TAAGGAATCTTCTTCTGCGTAATCCCAAGGTACTGGGCTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGH
IHSPYWGEDRKKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF

IVF0006318 (gene) of Melon (IVF77) v1 genome