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IVF0006430 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006430
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransportin-3 isoform X2
Genome locationchr11:7267953..7268763
RNA-Seq ExpressionIVF0006430
SyntenyIVF0006430
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041895.1 uncharacterized protein E6C27_scaffold67G002950 [Cucumis melo var. makuwa]4.28e-2358.7Show/hide
Query:  QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLK
        Q L +KP  SE+NP+LLE CSSKV+     NR VT  PAPKLF+YSSF DPNTK+ LLRGSPCHSV S  K+++ E+ S +S  SE S  L+
Subjt:  QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLK

KAA0066334.1 hypothetical protein E6C27_scaffold21G003950 [Cucumis melo var. makuwa]2.41e-128100Show/hide
Query:  MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQ
        MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQ
Subjt:  MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQ

Query:  NLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT
        NLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT
Subjt:  NLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT

KAE8648438.1 hypothetical protein Csa_008077, partial [Cucumis sativus]3.15e-1669.64Show/hide
Query:  PAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKY
        PA   F+YSS TDPNTK+ LL+GSPCHSV+SV K SNTE++SPYS SSE+S GL Y
Subjt:  PAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKY

TYK05420.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.61e-2157.61Show/hide
Query:  QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLK
        Q L +KP  SE+NP+LLE CSSKV+     NR VT  PAPK+F+YSSF DPNTK+ LLRGSPCHSV S  K+++ E+ S +S  SE S  L+
Subjt:  QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLK

TYK28317.1 transportin-3 isoform X2 [Cucumis melo var. makuwa]1.14e-1862.79Show/hide
Query:  LSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT
        LS    +L  A  S  + DT        P APKLF+YSSF DPNTKI LL+GSPC SVDS  KKSNTE+VSP S SSEESAGLKYT
Subjt:  LSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT

TrEMBL top hitse value%identityAlignment
A0A5A7TKC9 Uncharacterized protein9.4e-1958.7Show/hide
Query:  QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLK
        Q L +KP  SE+NP+LLE CSSKV+     NR VT  PAPKLF+YSSF DPNTK+ LLRGSPCHSV S  K+++ E+ S +S  SE S  L+
Subjt:  QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLK

A0A5A7UWP4 Transposon TX1 uncharacterized1.6e-1039.52Show/hide
Query:  NSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACSS
        NSLS  KF   G  Q S+    S + + +KG K    PKI LKH IRKQ SFDNVWTA+LKS+    C  K       +N + K S+S NN +LLE  SS
Subjt:  NSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACSS

Query:  KVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSV-DSVMKKSNTELVSPYSGSSEES
        ++++     RSV    +    S S F  P+   ++ R   C +  D    K+  E  SP S SSE+S
Subjt:  KVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSV-DSVMKKSNTELVSPYSGSSEES

A0A5D3BP61 Uncharacterized protein5.4e-99100Show/hide
Query:  MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQ
        MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQ
Subjt:  MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQ

Query:  NLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT
        NLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT
Subjt:  NLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT

A0A5D3C234 Ty3/gypsy retrotransposon protein1.6e-1857.61Show/hide
Query:  QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLK
        Q L +KP  SE+NP+LLE CSSKV+     NR VT  PAPK+F+YSSF DPNTK+ LLRGSPCHSV S  K+++ E+ S +S  SE S  L+
Subjt:  QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLK

A0A5D3DWV6 Transportin-3 isoform X25.7e-1662.79Show/hide
Query:  LSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT
        LS    +L  A  S  + DT        P APKLF+YSSF DPNTKI LL+GSPC SVDS  KKSNTE+VSP S SSEESAGLKYT
Subjt:  LSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTTCAATTACTGTGGTTCTGAAAATGCTGCCACCAACCCACCCTATTCAGATTTTAAACAGCCTCTCTATCAAAAAGTTTCAGTTAGCCGGTGCCGCTCAGTC
CTCAACAAAGGTTGTTACCTCATTCAAGCTTAGACCAAGTAAAGGAAAGAAAAAAGGCAGTTCTCCGAAAATTCCCCTAAAGCATTTCATCAGAAAACAAAAATCTTTTG
ATAATGTCTGGACTGCACTGCTAAAGTCTAAATCACTTGTTGCTTGCTCTTTCAAAGCTACAAAAGAGGCTCCACAGCAGAACTTAATTATCAAGCCCTCTCTATCTGAG
AATAACCCAAATCTCCTGGAGGCCTGCAGCTCCAAAGTTCGAATTGATACGCTTCAAAACAGGTCAGTTACAGCTCCCCCAGCTCCTAAACTCTTCAGTTACTCGAGTTT
CACAGATCCTAACACTAAAATTATCTTATTACGAGGTTCTCCATGCCACTCAGTTGATTCTGTTATGAAAAAGTCAAATACTGAATTGGTCTCTCCCTATAGTGGTAGCA
GTGAAGAATCAGCGGGCTTGAAATACACTTAG
mRNA sequenceShow/hide mRNA sequence
CACCCTTCCTAACTTACTGATTCTATGCTCAATAAACTTATGATTCATTTGTTTCATGAACACTCATCGGCGCCAGAGAAGAGGGAAGAGACGTTCAGGCAGGCCAATTA
ATGGGCTTTGTTAAACCCGCTAAAGACATTTGTTCGAATAAGTCTGTGGGCCCCACAAATTTTGATTCCTTTTTTAAAATCAGGTACCCAAAGGGTCGGATAGGGAAAAA
GAAAACAGAATGGCGCCTTCAATTACTGTGGTTCTGAAAATGCTGCCACCAACCCACCCTATTCAGATTTTAAACAGCCTCTCTATCAAAAAGTTTCAGTTAGCCGGTGC
CGCTCAGTCCTCAACAAAGGTTGTTACCTCATTCAAGCTTAGACCAAGTAAAGGAAAGAAAAAAGGCAGTTCTCCGAAAATTCCCCTAAAGCATTTCATCAGAAAACAAA
AATCTTTTGATAATGTCTGGACTGCACTGCTAAAGTCTAAATCACTTGTTGCTTGCTCTTTCAAAGCTACAAAAGAGGCTCCACAGCAGAACTTAATTATCAAGCCCTCT
CTATCTGAGAATAACCCAAATCTCCTGGAGGCCTGCAGCTCCAAAGTTCGAATTGATACGCTTCAAAACAGGTCAGTTACAGCTCCCCCAGCTCCTAAACTCTTCAGTTA
CTCGAGTTTCACAGATCCTAACACTAAAATTATCTTATTACGAGGTTCTCCATGCCACTCAGTTGATTCTGTTATGAAAAAGTCAAATACTGAATTGGTCTCTCCCTATA
GTGGTAGCAGTGAAGAATCAGCGGGCTTGAAATACACTTAG
Protein sequenceShow/hide protein sequence
MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSE
NNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT