CuGenDBv2

Gene ID	IVF0006443
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Coiled-coil domain-containing protein 12
Genome location	chr12:24084590..24088887
RNA-Seq Expression	IVF0006443
Synteny	IVF0006443
Gene Ontology terms	GO:0005684 - U2-type spliceosomal complex (cellular component) GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domains	IPR013169 - mRNA splicing factor Cwf18-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6584286.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]

8.21e-87

91.33

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Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
        MATE+DS EQVAAARKERL+ALRAAQELLN SDEKNS GEDKENGAT D +ETNL+MKFRNYVPHDKELQEGKL PPVLPKFEDPV TEPPQ KEDPFVN
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQN
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQN

XP_004137537.1 coiled-coil domain-containing protein 12 [Cucumis sativus]

1.80e-90

93.46

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Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
        MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVN
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

XP_008437152.1 PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]

2.12e-98

100

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Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
        MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

2.96e-87

90.85

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Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
        MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GEDKENGA ADT+ETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVN
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

XP_038894163.1 coiled-coil domain-containing protein 12 [Benincasa hispida]

1.12e-91

94.77

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Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
        MATEEDS EQVAAARKERL+ALRAAQELLNASDEKNS GEDKENGATAD +ETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEP Q KEDPFVN
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR08 Uncharacterized protein

1.3e-68

93.46

Show/hide

Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
        MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVN
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

A0A1S3ATB1 coiled-coil domain-containing protein 12

1.3e-74

100

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Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
        MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

A0A5D3BJ95 Coiled-coil domain-containing protein 12

1.3e-74

100

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Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
        MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

A0A6J1GST8 coiled-coil domain-containing protein 12-like

5.3e-65

89.54

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Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
        MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GED+ENGA ADT+E NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVN
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X1

1.4e-65

89.54

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Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN
        MATEEDS EQVAAAR+ERL+ALR AQELLNA DEK S GED+ENG  ADT+ETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVN
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

SwissProt top hits

e value

%identity

Alignment

Q8R344 Coiled-coil domain-containing protein 12

2.5e-11

35.25

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Query:  EQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFV------NIA
        E+ A  RKERLKALR   E     D ++   + K+     +    +  ++ RNYVP D++L+  ++        E+ V  +    K +P +      N+A
Subjt:  EQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFV------NIA

Query:  PKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ
        P+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++
Subjt:  PKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ

Q8WUD4 Coiled-coil domain-containing protein 12

1.1e-11

35.25

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Query:  EQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFV------NIA
        E+ A  RKERLKALR   E     D+++   + K      +  E +  ++ RNYVP D++L++ ++        E+ V  +    K +P +      N+A
Subjt:  EQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFV------NIA

Query:  PKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ
        P+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++
Subjt:  PKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).

3.9e-44

67.57

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Query:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QQKEDPF
        MA+E++S EQ AAARKE LKALRAAQEL           E KE+G     +E    MKFRNYVP  KELQ+GKLAPP LPKFEDP+   PP  ++KEDPF
Subjt:  MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QQKEDPF

Query:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGD
        VNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLMEEQEK+++ AE D
Subjt:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTACCGAAGAAGACTCCTTCGAACAAGTTGCTGCAGCACGTAAGGAGAGATTGAAAGCTCTTAGAGCTGCTCAGGAATTGTTAAACGCTTCAGATGAGAAAAATTC
TGTAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATACTGATGAAACTAATCTTAATATGAAATTTCGAAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGC
TTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTACTGAACCTCCACAACAAAAAGAGGACCCATTTGTAAACATTGCTCCAAAGAAACCAAACTGGGACCTT
AGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACACAGAAAGCATTATATAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACGA
TGACCAAAATGGTGCAGAGTGA

mRNA sequence

Show/hide mRNA sequence

ATCCGATTGAAGTCTTGATGGGCCTCTTACGATCCTGGCCTTATATATATACTTCATTCCGAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTT
TGTCCCTCCCGCCATTGCCCCAAGCTAACTTTCGCTAGTACAATTCTCTGAACAAAAGTTCCATTCCTCTATAGTTTCTCTATATTTTACGCACAACAGGCAATGGCTAC
CGAAGAAGACTCCTTCGAACAAGTTGCTGCAGCACGTAAGGAGAGATTGAAAGCTCTTAGAGCTGCTCAGGAATTGTTAAACGCTTCAGATGAGAAAAATTCTGTAGGAG
AGGATAAAGAGAATGGTGCTACTGCAGATACTGATGAAACTAATCTTAATATGAAATTTCGAAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGCTTGCCCCA
CCTGTATTGCCTAAATTTGAGGACCCTGTTACTACTGAACCTCCACAACAAAAAGAGGACCCATTTGTAAACATTGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGA
TGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACACAGAAAGCATTATATAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACGATGACCAAA
ATGGTGCAGAGTGATAGTTTGGCACACAAATTATGTTCTCTCCGATGTTACAGTTGCAGCAATATTCACAACTATATCGACATGCTTGGAGAAAATTGTCACTAAAAGGA
CAATGGCGTTTCTGGCTCGTAGGGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGGTGCAAATATTTTGATTTATAGTTTATCTATGGTGTGGCTCATTGTGTGTTC
CTTGACCATTACATCCAATAGTCTCATACTGGATATAGTGGATAGTGATTTGTAATTTACCTAAACTAAAAATAACTTTGTATTTCACTTTTATCTTCTACATTGTTGTT
TTTCTTCTTCTTCA

Protein sequence

Show/hide protein sequence

MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDL
RRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

IVF0006443 (gene) of Melon (IVF77) v1 genome