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IVF0006478 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006478
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description60S ribosomal protein L38
Genome locationchr11:30105986..30110965
RNA-Seq ExpressionIVF0006478
SyntenyIVF0006478
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]2.27e-6678.95Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVFSTRR----RQTSLSVQDLALSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARR
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS  ++ L VF + +    +Q+   V+   L+L NQQLRGSL SATKMPKQIHEIKDFLLTARR
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVFSTRR----RQTSLSVQDLALSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARR

Query:  KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP    ++L
Subjt:  KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

KAF3497693.1 hypothetical protein DY000_02056630 [Brassica cretica]1.18e-5570.55Show/hide
Query:  IQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVFSTRRRQTSLSVQDLALSLRNQQLRGSLSSATKM-PKQIHEIKDFLLTARRK
        + PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS  ++ L VF   +           ++  +   R  LS    + PKQIHEIKDFLLTARRK
Subjt:  IQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVFSTRRRQTSLSVQDLALSLRNQQLRGSLSSATKM-PKQIHEIKDFLLTARRK

Query:  DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
        DARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGL
Subjt:  DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

KAG6512538.1 hypothetical protein ZIOFF_030659 [Zingiber officinale]9.87e-4957.22Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVF-STRRRQTSLSVQDLALS----------------LRNQQLR------------
        PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCS  ++ L VF S +  +   S+  + LS                 RN +++            
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVF-STRRRQTSLSVQDLALS----------------LRNQQLR------------

Query:  ----------------GSLSSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
                         S      +PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  ----------------GSLSSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAG6515258.1 hypothetical protein ZIOFF_025650 [Zingiber officinale]1.12e-5160.99Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVF-STRRRQTSLSVQDLALS----------------LRNQQLR------------
        PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCS  ++ L VF S +  +   S+  + LS                 RN +++            
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVF-STRRRQTSLSVQDLALS----------------LRNQQLR------------

Query:  ----GSLSSATKM-------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
            G L+S+T M       PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  ----GSLSSATKM-------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KVH95117.1 Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus]4.94e-5571.72Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVFSTRR-RQTSLSVQDLALSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARRKD
        QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS  ++ L VF   +  +   S+  + L      +          PKQIHEIKDFLLTARRKD
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVFSTRR-RQTSLSVQDLALSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
        ARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG+
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

TrEMBL top hitse value%identityAlignment
A0A0D9X019 Uncharacterized protein6.2e-4269.59Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVFSTRRRQTSLSVQDLALSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARRKDAR
        PKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCS  ++ L VF            D A  L+ Q L   L+   + PKQIHEIKDFLLTARRKDAR
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVFSTRRRQTSLSVQDLALSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARRKDAR

Query:  SVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        SV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPPGL+VQ++
Subjt:  SVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A103XQP8 Ribosomal protein L38e (Fragment)1.2e-4271.72Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVFSTRR-RQTSLSVQDLALSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARRKD
        QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS  ++ L VF   +  +   S+  + L      +          PKQIHEIKDFLLTARRKD
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSN-IFILFVFSTRR-RQTSLSVQDLALSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
        ARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG+
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

A0A5J5ADJ5 GRAS domain-containing protein4.2e-3083.72Show/hide
Query:  LSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        L+L+ + +R   +   +MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  LSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A6A2WU09 60S ribosomal protein L381.7e-3146.92Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSNIFILFVFSTRRRQTSL----------------------------------SVQDLALSLRN
        PKQIHEIKDFLLTARRKDAR VKIK+S+DVVKFKVRCS        S  ++   L                                   ++D  L+ R 
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSNIFILFVFSTRRRQTSL----------------------------------SVQDLALSLRN

Query:  QQLRG-----SLSSATKMPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEK
        +  R      S       PKQIHEIKDFLLTARR                               KDARSVKIK+S+DVVKFKVRCSKYLYTL V D EK
Subjt:  QQLRG-----SLSSATKMPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEK

Query:  ADKLKQSLPPG
        ADKLKQSLPPG
Subjt:  ADKLKQSLPPG

A0A7C9DRH8 Uncharacterized protein5.4e-3091.03Show/hide
Query:  RGSLSSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        R +   + KMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  RGSLSSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L388.1e-3195.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

P46291 60S ribosomal protein L389.9e-2991.3Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q32PB9 60S ribosomal protein L382.1e-2376.81Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q95V84 60S ribosomal protein L381.3e-2582.61Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q9JJI8 60S ribosomal protein L387.3e-2478.26Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family5.7e-3295.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

AT3G59540.1 Ribosomal L38e protein family5.7e-3295.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGATTCAACCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTCAAGTT
CAAAGTACGATGCTCCAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTTGAGTGTGCAAGATCTGGCTTTGAGCCTCCGCAATCAGCAACTAC
GCGGCAGTCTCAGTTCTGCCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGACGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGC
AAAGATGTGGTGAAGTTCAAAGTACGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTGAAGCAGTCCCTTCCACCAGGTTTGAG
TGTACAAGATCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGATTCAACCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTCAAGTT
CAAAGTACGATGCTCCAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTTGAGTGTGCAAGATCTGGCTTTGAGCCTCCGCAATCAGCAACTAC
GCGGCAGTCTCAGTTCTGCCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGACGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGC
AAAGATGTGGTGAAGTTCAAAGTACGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTGAAGCAGTCCCTTCCACCAGGTTTGAG
TGTACAAGATCTGTGAAAGAATGGTTCAAGTTTTCTCGTGATCACGTGGACGATGACTAGATTTTTTATGGTTTTTTCTCCAACTATTTAGCATATGTTTAAATTACATT
TTTGAGCCTTGTAGTAATCCATATACTGTCTTCATTTTCGGGTAGATTGGATGTCCGAGTTTTTCATCTATGCATTTGGTGTTTCACCAAATTTATCCACTGTCAAAAGG
AAATTTCTTCATGCACCCTTTTATTCCTCTTTTAGATTTTTAAACAAAATTTCTTTTAGTCCAATGGTGGGGAG
Protein sequenceShow/hide protein sequence
MRIQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSNIFILFVFSTRRRQTSLSVQDLALSLRNQQLRGSLSSATKMPKQIHEIKDFLLTARRKDARSVKIKRS
KDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL