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IVF0006504 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006504
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationchr07:155229..156768
RNA-Seq ExpressionIVF0006504
SyntenyIVF0006504
Gene Ontology termsGO:0009765 - photosynthesis, light harvesting (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064677.1 chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo var. makuwa]1.21e-51100Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
        MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA

KAE8649969.1 hypothetical protein Csa_012286 [Cucumis sativus]9.04e-6866.17Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAKIVETNE
        MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSA+PFTAVKAIANSPLG SLQRQLEKKK SA     N 
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAKIVETNE

Query:  SLVKQLIGIILNSYKMTIKLSDSLLVSACIKRLDGFPASTVAFR-------------------------SAPICIILFTHLSRSPPILMPNLWLTAATIE
        S  K L        +   K SDSLLVSACIKRLD F  + +A R                         SA ICIILFTHLS SP  ++ NLWLTAATIE
Subjt:  SLVKQLIGIILNSYKMTIKLSDSLLVSACIKRLDGFPASTVAFR-------------------------SAPICIILFTHLSRSPPILMPNLWLTAATIE

Query:  L
        L
Subjt:  L

TYK19914.1 chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis melo var. makuwa]6.63e-7773.16Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAKIVETNE
        MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA       
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAKIVETNE

Query:  SLVKQLIGIILNSYKMTIKLSDSLLVSACIK---RLDGFP---------ASTVAFRSAPICIILFTHLSRSPPILMPNLWLTAATIELHF
                 + NS K    L++     +C     R+   P         ASTVAFRSAPICIILFTHLSRSPPILMPNLWLTAATIEL +
Subjt:  SLVKQLIGIILNSYKMTIKLSDSLLVSACIK---RLDGFP---------ASTVAFRSAPICIILFTHLSRSPPILMPNLWLTAATIELHF

XP_008453033.2 PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis melo]8.60e-52100Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
        MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA

XP_008453034.2 PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis melo]5.75e-52100Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
        MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA

TrEMBL top hitse value%identityAlignment
A0A0A0L3G2 Chlorophyll a-b binding protein, chloroplastic7.5e-7269.55Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA-------
        MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSA+PFTAVKAIANSPLG SLQRQLEKKK SA       
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA-------

Query:  ----------------KIVETNESLVKQLIGIILNSYK---MTIKLSDSLLVSACIKRLDGFPASTVAFR---------SAPICIILFTHLSRSPPILMP
                        KIVETNESLVKQLIGIILN  +   +TIKLSDSLLVSACIKRLD F  + +A R         SA ICIILFTHLS SP  ++ 
Subjt:  ----------------KIVETNESLVKQLIGIILNSYK---MTIKLSDSLLVSACIKRLDGFPASTVAFR---------SAPICIILFTHLSRSPPILMP

Query:  NLWLTAATIE-----------LHFIRALDLDDCSANNLSFVKR
        NLWLTAATIE           L+FIRALDLDDCSAN  SFVKR
Subjt:  NLWLTAATIE-----------LHFIRALDLDDCSANNLSFVKR

A0A1S3BVA0 Chlorophyll a-b binding protein, chloroplastic2.4e-41100Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
        MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA

A0A1S3BWE1 Chlorophyll a-b binding protein, chloroplastic2.4e-41100Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
        MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA

A0A5A7VCG1 Chlorophyll a-b binding protein, chloroplastic2.4e-41100Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
        MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA

A0A5D3D8N7 Chlorophyll a-b binding protein of LHCII type 1 isoform X21.5e-5973.16Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAKIVETNE
        MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA       
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAKIVETNE

Query:  SLVKQLIGIILNSYKMTIKLSDSLLVSACI---KRLDGFP---------ASTVAFRSAPICIILFTHLSRSPPILMPNLWLTAATIELHF
                 + NS K    L++     +C     R+   P         ASTVAFRSAPICIILFTHLSRSPPILMPNLWLTAATIEL +
Subjt:  SLVKQLIGIILNSYKMTIKLSDSLLVSACI---KRLDGFP---------ASTVAFRSAPICIILFTHLSRSPPILMPNLWLTAATIELHF

SwissProt top hitse value%identityAlignment
Q9C9K1 Chlorophyll a-b binding protein 7, chloroplastic2.0e-1353.19Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSIS-HRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
        MAL Q     SS+SSS +S +        P       R+  +++  RS CRASWQELAGVL+FSA+PFTAVKAIANS +G SL+R+LE+KKK A
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSIS-HRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA

Arabidopsis top hitse value%identityAlignment
AT1G76570.1 Chlorophyll A-B binding family protein1.4e-1453.19Show/hide
Query:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSIS-HRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA
        MAL Q     SS+SSS +S +        P       R+  +++  RS CRASWQELAGVL+FSA+PFTAVKAIANS +G SL+R+LE+KKK A
Subjt:  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSIS-HRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTAATTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCCTCATTCTACGGAACGTATCTTCAACAGCTCCGTCCGCTCACCACAACCCTTAATCT
TCGAAGCAACCACTCTATCTCTCATCGTTCCACTTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTGATCTTCTCTGCAGTTCCTTTCACGGCGGTTAAAGCCATTG
CCAATAGCCCGCTTGGAGAGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAAATCTGCCAAGATCGTGGAAACCAACGAGTCCCTGGTTAAACAACTTATTGGAATCATT
TTGAACTCATACAAAATGACAATTAAACTTAGCGATTCATTGCTGGTAAGTGCTTGCATTAAGAGACTGGATGGCTTTCCTGCCTCCACGGTCGCCTTCAGATCTGCTCC
TATTTGTATCATTCTCTTCACTCACCTTTCTCGCTCTCCTCCAATCCTTATGCCAAATCTGTGGTTAACTGCTGCCACCATTGAACTCCACTTCATAAGGGCTCTTGATT
TAGATGATTGTTCTGCAAACAATCTGTCGTTTGTAAAGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCTAATTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCCTCATTCTACGGAACGTATCTTCAACAGCTCCGTCCGCTCACCACAACCCTTAATCT
TCGAAGCAACCACTCTATCTCTCATCGTTCCACTTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTGATCTTCTCTGCAGTTCCTTTCACGGCGGTTAAAGCCATTG
CCAATAGCCCGCTTGGAGAGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAAATCTGCCAAGATCGTGGAAACCAACGAGTCCCTGGTTAAACAACTTATTGGAATCATT
TTGAACTCATACAAAATGACAATTAAACTTAGCGATTCATTGCTGGTAAGTGCTTGCATTAAGAGACTGGATGGCTTTCCTGCCTCCACGGTCGCCTTCAGATCTGCTCC
TATTTGTATCATTCTCTTCACTCACCTTTCTCGCTCTCCTCCAATCCTTATGCCAAATCTGTGGTTAACTGCTGCCACCATTGAACTCCACTTCATAAGGGCTCTTGATT
TAGATGATTGTTCTGCAAACAATCTGTCGTTTGTAAAGCGTTGA
Protein sequenceShow/hide protein sequence
MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAKIVETNESLVKQLIGII
LNSYKMTIKLSDSLLVSACIKRLDGFPASTVAFRSAPICIILFTHLSRSPPILMPNLWLTAATIELHFIRALDLDDCSANNLSFVKR