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IVF0006516 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006516
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationchr12:7110943..7111380
RNA-Seq ExpressionIVF0006516
SyntenyIVF0006516
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026280.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.99e-7385.42Show/hide
Query:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
        MP+GRPRKHPDA+ SNAAREAAMGSGESDAESSRPHVEGN+EEQLLDRLAQRLI GIR AQSD EKKYGIERLKALGATTFVGTTNP DAE WLTLIEKC
Subjt:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC

Query:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDI
        F+VTRC EDRKVELA+FLLQNG     EDWW MEESRRR T D+
Subjt:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDI

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.10e-88100Show/hide
Query:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
        MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
Subjt:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC

Query:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDI
        FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDI
Subjt:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDI

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.69e-6982.07Show/hide
Query:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
        MPRG+PRKHPDA+ SNAA+EAAMGSGESDAESSRP VE N+EEQLLDRLAQRL+SGIRSAQSDPEKKYG ERLKALGATTF GTTNP D EAWLTLIEKC
Subjt:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC

Query:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS
        FRVTR  EDRKVELA+FLLQN      EDWWRMEESRRR T  ++
Subjt:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS

KAA0047616.1 uncharacterized protein E6C27_scaffold115G00890 [Cucumis melo var. makuwa]1.61e-6376.55Show/hide
Query:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
        MPRGRPRK   A+ SNAAREAAMGS ESDAESSR HVE N+EEQLLDRLAQ L+SGIRSAQS+ EK + IERLKALGATTF GTTN ADAEAWLTLIEKC
Subjt:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC

Query:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS
        F+V RC EDRKVEL  FLL+NG     EDWWR+ ESRRR T D+S
Subjt:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]3.20e-7083.45Show/hide
Query:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
        MPRG+PRKHPDA+ SNAA+EAAMGSGESDAESSRP VE N+EEQLLDRLAQRL+SGIRSAQSDPEKKYG ERLKALGATTF GTTNP D EAWLTLIEKC
Subjt:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC

Query:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS
        FRVTR  EDRKVELA+FLLQN      EDWWRMEESRRR T D+S
Subjt:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein5.7e-6185.42Show/hide
Query:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
        MP+GRPRKHPDA+ SNAAREAAMGSGESDAESSRPHVEGN+EEQLLDRLAQRLI GIR AQSD EKKYGIERLKALGATTFVGTTNP DAE WLTLIEKC
Subjt:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC

Query:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDI
        F+VTRC EDRKVELA+FLLQNG     EDWW MEESRRR T D+
Subjt:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDI

A0A5A7T1M0 Reverse transcriptase3.5e-5882.07Show/hide
Query:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
        MPRG+PRKHPDA+ SNAA+EAAMGSGESDAESSRP VE N+EEQLLDRLAQRL+SGIRSAQSDPEKKYG ERLKALGATTF GTTNP D EAWLTLIEKC
Subjt:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC

Query:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS
        FRVTR  EDRKVELA+FLLQN      EDWWRMEESRRR T  ++
Subjt:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS

A0A5A7U067 Retrotrans_gag domain-containing protein1.7e-4976.55Show/hide
Query:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
        MPRGRPRK   A+ SNAAREAAMGS ESDAESSR HVE N+EEQLLDRLAQ L+SGIRSAQS+ EK + IERLKALGATTF GTTN ADAEAWLTLIEKC
Subjt:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC

Query:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS
        F+V RC EDRKVEL  FLL+NG     EDWWR+ ESRRR T D+S
Subjt:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS

A0A5D3BB91 Reverse transcriptase2.4e-5983.45Show/hide
Query:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
        MPRG+PRKHPDA+ SNAA+EAAMGSGESDAESSRP VE N+EEQLLDRLAQRL+SGIRSAQSDPEKKYG ERLKALGATTF GTTNP D EAWLTLIEKC
Subjt:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC

Query:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS
        FRVTR  EDRKVELA+FLLQN      EDWWRMEESRRR T D+S
Subjt:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS

A0A5D3DES5 DNA/RNA polymerases superfamily protein9.1e-75100Show/hide
Query:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
        MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC
Subjt:  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC

Query:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDI
        FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDI
Subjt:  FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCGAGGTAGACCTCGAAAGCACCCTGATGCAAAAACTAGTAACGCTGCTAGAGAAGCAGCGATGGGAAGTGGGGAGTCTGATGCCGAATCTAGTCGGCCTCATGT
TGAAGGGAATATGGAAGAACAATTGCTTGATAGATTGGCTCAAAGATTAATTTCGGGGATTAGATCGGCACAATCAGACCCTGAAAAGAAGTATGGGATTGAGAGATTGA
AAGCCTTGGGTGCTACTACTTTTGTGGGGACAACAAATCCCGCCGATGCTGAAGCATGGCTTACTTTAATTGAAAAGTGCTTCAGAGTAACAAGATGTCCGGAGGATAGG
AAGGTGGAACTTGCTTCCTTTTTACTCCAAAATGGCGGTGGTGCTAAAGGTGAAGATTGGTGGCGCATGGAAGAAAGTAGACGAAGAATTACAAGTGATATAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCCGAGGTAGACCTCGAAAGCACCCTGATGCAAAAACTAGTAACGCTGCTAGAGAAGCAGCGATGGGAAGTGGGGAGTCTGATGCCGAATCTAGTCGGCCTCATGT
TGAAGGGAATATGGAAGAACAATTGCTTGATAGATTGGCTCAAAGATTAATTTCGGGGATTAGATCGGCACAATCAGACCCTGAAAAGAAGTATGGGATTGAGAGATTGA
AAGCCTTGGGTGCTACTACTTTTGTGGGGACAACAAATCCCGCCGATGCTGAAGCATGGCTTACTTTAATTGAAAAGTGCTTCAGAGTAACAAGATGTCCGGAGGATAGG
AAGGTGGAACTTGCTTCCTTTTTACTCCAAAATGGCGGTGGTGCTAAAGGTGAAGATTGGTGGCGCATGGAAGAAAGTAGACGAAGAATTACAAGTGATATAAGTTAG
Protein sequenceShow/hide protein sequence
MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDR
KVELASFLLQNGGGAKGEDWWRMEESRRRITSDIS