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IVF0006536 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006536
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:9785255..9785695
RNA-Seq ExpressionIVF0006536
SyntenyIVF0006536
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046468.1 hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa]5.52e-102100Show/hide
Query:  MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRD
        MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRD
Subjt:  MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRD

Query:  DCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLLSPWCYRK
        DCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLLSPWCYRK
Subjt:  DCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLLSPWCYRK

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]4.27e-3555.2Show/hide
Query:  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGE---NRGR
         F  RDRENL D W   KR++K C HH I +CVLME+FYF LS++  Q+ ++VF GG+LR+SYNQ K MLDTM SNSQE RD+   S+ ++     NRGR
Subjt:  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGE---NRGR

Query:  TDEGMDRNAMVTLQGQVTEMNKLLS
         ++G+D + MV LQGQV EMN L S
Subjt:  TDEGMDRNAMVTLQGQVTEMNKLLS

KAA0061983.1 uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa]3.15e-3465.98Show/hide
Query:  MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE
        MKKFF  I+ A+RRQDL +F+ RDR+NL+DAWSI KR+VKACLHHGI+K VLME FYF LS+D +Q+ D +F+GG+LR+SYNQ K MLD+M +NSQ+
Subjt:  MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]9.05e-3554.55Show/hide
Query:  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDE
        +F+ RD+EN++D WS  KRLVKAC  HGI +CV ME FYF LS+D  Q V+ +FVGG+LR+SYNQ K  LD+M +NSQE  D    S+      RGRT E
Subjt:  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDE

Query:  GMDRNAMVTLQGQVTEMNKLL
        G+D++ +V LQGQ+  MN LL
Subjt:  GMDRNAMVTLQGQVTEMNKLL

KGN53801.1 hypothetical protein Csa_014772 [Cucumis sativus]1.05e-3159.05Show/hide
Query:  LVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENR---GRTDEGMDRNAMVTLQGQVTE
        ++K CLHH I  CV++E+FYF LS D QQ VD VF+GG+LR S N  KT LD M+SNSQE RD+   S  E+  NR   GRT++G + NAM+TLQ QVTE
Subjt:  LVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENR---GRTDEGMDRNAMVTLQGQVTE

Query:  MNKLL
        MNKLL
Subjt:  MNKLL

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein2.7e-2654.55Show/hide
Query:  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDE
        +F+ RD+EN++D WS  KRLVKAC  HGI +CV ME FYF LS+D  Q V+ +FVGG+LR+SYNQ K  LD+M +NSQE  D    S+     +RGRT E
Subjt:  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDE

Query:  GMDRNAMVTLQGQVTEMNKLL
        G+D++ +V LQGQ+  MN LL
Subjt:  GMDRNAMVTLQGQVTEMNKLL

A0A5A7TUE1 Uncharacterized protein2.0e-77100Show/hide
Query:  MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRD
        MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRD
Subjt:  MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRD

Query:  DCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLLSPWCYRK
        DCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLLSPWCYRK
Subjt:  DCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLLSPWCYRK

A0A5A7V1F3 Retrotrans_gag domain-containing protein2.2e-2865.98Show/hide
Query:  MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE
        MKKFF  I+ A+RRQDL +F+ RDR+NL+DAWSI KR+VKACLHHGI+K VLME FYF LS+D +Q+ D +F+GG+LR+SYNQ K MLD+M +NSQ+
Subjt:  MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE

A0A5D3CC26 Uncharacterized protein3.8e-2855.65Show/hide
Query:  FRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQEN---GENRGRT
        F  RDRENL D W   KR++K C HH I +CVLME+FYF LS++  Q+ ++VF GG+LR+SYNQ K MLDTM SNSQE RD+   S+ ++     NRGR 
Subjt:  FRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQEN---GENRGRT

Query:  DEGMDRNAMVTLQGQVTEMNKLLS
        ++G+D + MV LQGQV EMN L S
Subjt:  DEGMDRNAMVTLQGQVTEMNKLLS

A0A5D3DR17 Retrotransposon gag protein2.8e-2354.7Show/hide
Query:  MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRD
        +KKFFL I+N RRRQD  +F+ R+ ENL+DAWS  KR++K CL  GI + VLME FYF+LS+D Q TV  VF GG+L++ YNQ K+ML++M  NSQE  D
Subjt:  MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRD

Query:  DCISSQQENGENRGRTD
           SS+   GE + +TD
Subjt:  DCISSQQENGENRGRTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAATTCTTCCTGCCTATCGAGAATGCAAGAAGAAGGCAGGACCTAAAGGTCTTCAGACATAGGGATAGAGAGAATTTGAATGACGCATGGTCGATATCCAAGCG
TTTGGTGAAAGCATGCCTCCATCATGGCATATCTAAATGTGTGTTGATGGAGAAATTCTACTTTCGGCTAAGTGAGGATGCTCAACAAACTGTTGATGTTGTGTTTGTAG
GAGGAGTGTTGAGAAATTCCTACAACCAGACTAAAACAATGCTGGACACCATGATTAGCAATAGCCAAGAATGTAGGGATGATTGCATTAGTTCGCAGCAAGAGAATGGA
GAAAACAGAGGAAGAACAGACGAGGGAATGGATAGAAACGCAATGGTGACATTACAAGGACAAGTTACTGAAATGAACAAGTTGCTAAGTCCATGGTGTTATCGAAAGTA
A
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAATTCTTCCTGCCTATCGAGAATGCAAGAAGAAGGCAGGACCTAAAGGTCTTCAGACATAGGGATAGAGAGAATTTGAATGACGCATGGTCGATATCCAAGCG
TTTGGTGAAAGCATGCCTCCATCATGGCATATCTAAATGTGTGTTGATGGAGAAATTCTACTTTCGGCTAAGTGAGGATGCTCAACAAACTGTTGATGTTGTGTTTGTAG
GAGGAGTGTTGAGAAATTCCTACAACCAGACTAAAACAATGCTGGACACCATGATTAGCAATAGCCAAGAATGTAGGGATGATTGCATTAGTTCGCAGCAAGAGAATGGA
GAAAACAGAGGAAGAACAGACGAGGGAATGGATAGAAACGCAATGGTGACATTACAAGGACAAGTTACTGAAATGAACAAGTTGCTAAGTCCATGGTGTTATCGAAAGTA
A
Protein sequenceShow/hide protein sequence
MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENG
ENRGRTDEGMDRNAMVTLQGQVTEMNKLLSPWCYRK