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IVF0006539 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006539
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:24479015..24479461
RNA-Seq ExpressionIVF0006539
SyntenyIVF0006539
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026022.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]6.33e-3674.71Show/hide
Query:  MFRDIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTG
        M  D+FS GI REA+SLEGEL CDPKRSKRW +LPTSGERSSG RNHWKCTCSEGNG  SR+  A PKKTRA   RTQFS  GVK+G
Subjt:  MFRDIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTG

KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]2.44e-3961.29Show/hide
Query:  MFRDIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAI
        M   +F+QGI REASSLEGEL  DPKR KRW +L TSGER SGVRNHWKCTCS  N   SR+   CP KTR R  RTQFS    K+  P V SLC VL I
Subjt:  MFRDIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAI

Query:  NLWIFGARTSRTSTYTSGILPNTF
        +L IFGA T RTS  T  +L N F
Subjt:  NLWIFGARTSRTSTYTSGILPNTF

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.70e-5770.34Show/hide
Query:  DIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLW
        D+F   + REASSLE EL CD KRSKRW + PT+GERSSGVRNHWKCTCSEGNG  SR+  A PKKTRAR  R+QFS  G K+  PTV SLCFVL INL 
Subjt:  DIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLW

Query:  IFGARTSRTSTYTSGILPNTFSHRIGQEASSLEGEMRCDPKRSKR
        IF ART RTST+T+G+LP+ FS  IGQEASSLEGE+ C+PKRSKR
Subjt:  IFGARTSRTSTYTSGILPNTFSHRIGQEASSLEGEMRCDPKRSKR

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]2.72e-3546.89Show/hide
Query:  KRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLWIFGARTSRTSTYTSGILPNTFS
        K  +RW +LPTSGERSSGVRN WKCTC EGNG  SR+  A PKKTRAR  +TQFS  G K+  PTV +LC VL  +L IFGA T RTST+T G+LP+TFS
Subjt:  KRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLWIFGARTSRTSTYTSGILPNTFS

Query:  HR------------------------------------------------------IGQEASSLEGEMRCDPKRSKR
         R                                                      IG+EASSLEGE+ CDPK SKR
Subjt:  HR------------------------------------------------------IGQEASSLEGEMRCDPKRSKR

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]1.55e-4553.63Show/hide
Query:  MFRDIFSQGISREASSLEGELRC--------------------------------DPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPK
        M  D FSQGI REASSLEGEL+C                                DPK SKRW +LPTSGERSSGVRNHWKCTCSEGN   SR++   PK
Subjt:  MFRDIFSQGISREASSLEGELRC--------------------------------DPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPK

Query:  KTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLWIFGARTSRTSTYTSGILPNTFSHRIGQEASSLEGEMRCDPKRSK
        KT AR  + QFSH GVK+G PTV SL   + I L +FGA     ST+T  +L +T S+ IG+EASSLE E+ CDPKRSK
Subjt:  KTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLWIFGARTSRTSTYTSGILPNTFSHRIGQEASSLEGEMRCDPKRSK

TrEMBL top hitse value%identityAlignment
A0A5A7SLK2 Retrovirus-related Pol polyprotein from transposon 17.61.5e-2774.71Show/hide
Query:  MFRDIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTG
        M  D+FS GI REA+SLEGEL CDPKRSKRW +LPTSGERSSG RNHWKCTCSEGNG  SR+  A PKKTRA   RTQFS  GVK+G
Subjt:  MFRDIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTG

A0A5A7V368 Uncharacterized protein9.1e-3061.29Show/hide
Query:  MFRDIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAI
        M   +F+QGI REASSLEGEL  DPKR KRW +L TSGER SGVRNHWKCTCS  N   SR+   CP KTR R  RTQFS    K+  P V SLC VL I
Subjt:  MFRDIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAI

Query:  NLWIFGARTSRTSTYTSGILPNTF
        +L IFGA T RTS  T  +L N F
Subjt:  NLWIFGARTSRTSTYTSGILPNTF

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein5.7e-4870.34Show/hide
Query:  DIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLW
        D+F   + REASSLE EL CD KRSKRW + PT+GERSSGVRNHWKCTCSEGNG  SR+  A PKKTRAR  R+QFS  G K+  PTV SLCFVL INL 
Subjt:  DIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLW

Query:  IFGARTSRTSTYTSGILPNTFSHRIGQEASSLEGEMRCDPKRSKR
        IF ART RTST+T+G+LP+ FS  IGQEASSLEGE+ C+PKRSKR
Subjt:  IFGARTSRTSTYTSGILPNTFSHRIGQEASSLEGEMRCDPKRSKR

A0A5D3DFP2 Uncharacterized protein1.7e-2846.89Show/hide
Query:  KRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLWIFGARTSRTSTYTSGILPNTFS
        K  +RW +LPTSGERSSGVRN WKCTC EGNG  SR+  A PKKTRAR  +TQFS  G K+  PTV +LC VL  +L IFGA T RTST+T G+LP+TFS
Subjt:  KRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLWIFGARTSRTSTYTSGILPNTFS

Query:  HR------------------------------------------------------IGQEASSLEGEMRCDPKRSKR
         R                                                      IG+EASSLEGE+ CDPK SKR
Subjt:  HR------------------------------------------------------IGQEASSLEGEMRCDPKRSKR

A0A5D3DIF8 Gag/pol protein2.0e-3753.63Show/hide
Query:  MFRDIFSQGISREASSLEGELRC--------------------------------DPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPK
        M  D FSQGI REASSLEGEL+C                                DPK SKRW +LPTSGERSSGVRNHWKCTCSEGN   SR++   PK
Subjt:  MFRDIFSQGISREASSLEGELRC--------------------------------DPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPK

Query:  KTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLWIFGARTSRTSTYTSGILPNTFSHRIGQEASSLEGEMRCDPKRSK
        KT AR  + QFSH GVK+G PTV SL  +  I L +FGA     ST+T  +L +T S+ IG+EASSLE E+ CDPKRSK
Subjt:  KTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLWIFGARTSRTSTYTSGILPNTFSHRIGQEASSLEGEMRCDPKRSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCGTGACATATTTTCCCAAGGTATAAGTCGGGAAGCAAGCTCGTTGGAGGGAGAACTGAGGTGCGATCCAAAACGATCCAAAAGATGGTCAATACTTCCAACGAG
TGGCGAACGCTCGTCCGGTGTTAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAATGGGTGGATCTCGAGGTCTTACGATGCTTGTCCCAAGAAGACGAGAGCGAGAA
CACACCGTACGCAGTTTTCTCATATTGGGGTAAAAACCGGTGCCCCGACGGTTTTTTCTCTTTGCTTCGTGTTGGCCATAAATCTATGGATCTTTGGGGCTCGTACTTCG
AGGACCTCAACCTACACTTCTGGCATACTTCCTAACACGTTTTCCCATCGTATAGGTCAGGAAGCAAGCTCGTTGGAGGGAGAAATGAGGTGTGACCCAAAACGGTCCAA
AAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCGTGACATATTTTCCCAAGGTATAAGTCGGGAAGCAAGCTCGTTGGAGGGAGAACTGAGGTGCGATCCAAAACGATCCAAAAGATGGTCAATACTTCCAACGAG
TGGCGAACGCTCGTCCGGTGTTAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAATGGGTGGATCTCGAGGTCTTACGATGCTTGTCCCAAGAAGACGAGAGCGAGAA
CACACCGTACGCAGTTTTCTCATATTGGGGTAAAAACCGGTGCCCCGACGGTTTTTTCTCTTTGCTTCGTGTTGGCCATAAATCTATGGATCTTTGGGGCTCGTACTTCG
AGGACCTCAACCTACACTTCTGGCATACTTCCTAACACGTTTTCCCATCGTATAGGTCAGGAAGCAAGCTCGTTGGAGGGAGAAATGAGGTGTGACCCAAAACGGTCCAA
AAGATAG
Protein sequenceShow/hide protein sequence
MFRDIFSQGISREASSLEGELRCDPKRSKRWSILPTSGERSSGVRNHWKCTCSEGNGWISRSYDACPKKTRARTHRTQFSHIGVKTGAPTVFSLCFVLAINLWIFGARTS
RTSTYTSGILPNTFSHRIGQEASSLEGEMRCDPKRSKR