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IVF0006540 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006540
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:7930488..7931108
RNA-Seq ExpressionIVF0006540
SyntenyIVF0006540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032450.1 hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa]7.09e-6865.78Show/hide
Query:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
        MLQPKRSSSQVYCSREC  L+YV  EK IVSY+LQPRMSSSQICC REG PLKYVA EKI VLKYVAAEKIIVSN+LQPRRSSSQICCSQ D   +YI+ 
Subjt:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV

Query:  ENVVVLDMLQLKKS------REDHR------------LKYVVAKNVVVSYMLQPKMSSSQICCSREGRRLKYVVIENVVVSNMLQPR
        E VVV  +LQ + S      R + R            LKYV A+ ++VS MLQP+ SSSQICCS++   LKY+V E VVVS MLQPR
Subjt:  ENVVVLDMLQLKKS------REDHR------------LKYVVAKNVVVSYMLQPKMSSSQICCSREGRRLKYVVIENVVVSNMLQPR

KAA0051515.1 hypothetical protein E6C27_scaffold174G00380 [Cucumis melo var. makuwa]1.72e-7789.73Show/hide
Query:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
        MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
Subjt:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV

Query:  ENVVVLDMLQLKKSREDHRLKYVVAKNVVVSYMLQPKMSSSQICCS
        ENVVVLDMLQLKKS        V A+NVVVS ML P+ SS QICCS
Subjt:  ENVVVLDMLQLKKSREDHRLKYVVAKNVVVSYMLQPKMSSSQICCS

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]4.72e-7066.49Show/hide
Query:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
        MLQP+RSSSQ+ CS++   LKY+  EKV+VSY+LQPRMSSSQICCRREG PLKYVA EKIIVLKYVAAEKIIVSN+LQPRRSSSQICCSQ D  LKYI+ 
Subjt:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV

Query:  ENVVVLDMLQLKKS-------REDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRRLKY-----------VVIENVVVSNMLQ
        E VVV  MLQ ++S       ++D  LKY+VA+ VVVSYML P+MSSSQICC REGR LKY           V  E ++VSNML+
Subjt:  ENVVVLDMLQLKKS-------REDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRRLKY-----------VVIENVVVSNMLQ

KAA0064215.1 hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa]1.50e-6857.08Show/hide
Query:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
        MLQ +RSSSQ+ CS++   LKY+  EKV VSY+LQPR+SSSQICCRREG PLKYVA EKI VLKYVAAEKIIVSN+LQPRRSSSQICCSQ D  LKYI+ 
Subjt:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV

Query:  ENVVVLDMLQLKKS--------------------------------------REDHR--------------------------LKYVVAKNVVVSYMLQP
        E VVV  MLQ ++S                                      R + R                          LKYV+AKNVVVSYML+P
Subjt:  ENVVVLDMLQLKKS--------------------------------------REDHR--------------------------LKYVVAKNVVVSYMLQP

Query:  KMSSSQICCSREGRRLKYVVIENVVVSNMLQPR
        K+SSSQICCSREGRRLKYVVIENVVVSNMLQPR
Subjt:  KMSSSQICCSREGRRLKYVVIENVVVSNMLQPR

TYK18585.1 hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa]2.04e-6757.08Show/hide
Query:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
        MLQ +RSSSQ+ CS++   LKY+  EKV VSY+LQPR+SSSQICCRREG PLKYVA EKI VLKYVAAEKIIVSN+LQPRRSSSQICCSQ D  LKYI+ 
Subjt:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV

Query:  ENVVVLDMLQLKKS--------------------------------------REDHR--------------------------LKYVVAKNVVVSYMLQP
        E VVV  MLQ ++S                                      R + R                          LKYV+AKNVVVSYML+P
Subjt:  ENVVVLDMLQLKKS--------------------------------------REDHR--------------------------LKYVVAKNVVVSYMLQP

Query:  KMSSSQICCSREGRRLKYVVIENVVVSNMLQPR
        K+SSSQICCSREGRRLKYVVIENVVVSNMLQPR
Subjt:  KMSSSQICCSREGRRLKYVVIENVVVSNMLQPR

TrEMBL top hitse value%identityAlignment
A0A5A7UEK9 Uncharacterized protein5.5e-5566.49Show/hide
Query:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
        MLQP+RSSSQ+ CS++   LKY+  EKV+VSY+LQPRMSSSQICCRREG PLKYVA EKIIVLKYVAAEKIIVSN+LQPRRSSSQICCSQ D  LKYI+ 
Subjt:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV

Query:  ENVVVLDMLQLKKS-------REDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRR-----------LKYVVIENVVVSNMLQ
        E VVV  MLQ ++S       ++D  LKY+VA+ VVVSYML P+MSSSQICC REGR            LKYV  E ++VSNML+
Subjt:  ENVVVLDMLQLKKS-------REDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRR-----------LKYVVIENVVVSNMLQ

A0A5A7VE92 Uncharacterized protein1.2e-5457.08Show/hide
Query:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
        MLQ +RSSSQ+ CS++   LKY+  EKV VSY+LQPR+SSSQICCRREG PLKYVA EKI VLKYVAAEKIIVSN+LQPRRSSSQICCSQ D  LKYI+ 
Subjt:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV

Query:  ENVVVLDMLQLKKS---------------------------------------RE-------------------------DHRLKYVVAKNVVVSYMLQP
        E VVV  MLQ ++S                                       RE                          + LKYV+AKNVVVSYML+P
Subjt:  ENVVVLDMLQLKKS---------------------------------------RE-------------------------DHRLKYVVAKNVVVSYMLQP

Query:  KMSSSQICCSREGRRLKYVVIENVVVSNMLQPR
        K+SSSQICCSREGRRLKYVVIENVVVSNMLQPR
Subjt:  KMSSSQICCSREGRRLKYVVIENVVVSNMLQPR

A0A5D3C2C8 Retrotransposon gag protein5.5e-5566.49Show/hide
Query:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
        MLQP+RSSSQ+ CS++   LKY+  EKV+VSY+LQPRMSSSQICCRREG PLKYVA EKIIVLKYVAAEKIIVSN+LQPRRSSSQICCSQ D  LKYI+ 
Subjt:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV

Query:  ENVVVLDMLQLKKS-------REDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRR-----------LKYVVIENVVVSNMLQ
        E VVV  MLQ ++S       ++D  LKY+VA+ VVVSYML P+MSSSQICC REGR            LKYV  E ++VSNML+
Subjt:  ENVVVLDMLQLKKS-------REDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRR-----------LKYVVIENVVVSNMLQ

A0A5D3D4V9 Uncharacterized protein1.2e-5457.08Show/hide
Query:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
        MLQ +RSSSQ+ CS++   LKY+  EKV VSY+LQPR+SSSQICCRREG PLKYVA EKI VLKYVAAEKIIVSN+LQPRRSSSQICCSQ D  LKYI+ 
Subjt:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV

Query:  ENVVVLDMLQLKKS---------------------------------------RE-------------------------DHRLKYVVAKNVVVSYMLQP
        E VVV  MLQ ++S                                       RE                          + LKYV+AKNVVVSYML+P
Subjt:  ENVVVLDMLQLKKS---------------------------------------RE-------------------------DHRLKYVVAKNVVVSYMLQP

Query:  KMSSSQICCSREGRRLKYVVIENVVVSNMLQPR
        K+SSSQICCSREGRRLKYVVIENVVVSNMLQPR
Subjt:  KMSSSQICCSREGRRLKYVVIENVVVSNMLQPR

A0A5D3DKF5 Uncharacterized protein1.3e-6189.73Show/hide
Query:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
        MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV
Subjt:  MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILV

Query:  ENVVVLDMLQLKKSREDHRLKYVVAKNVVVSYMLQPKMSSSQICCS
        ENVVVLDMLQLKKS        V A+NVVVS ML P+ SS QICCS
Subjt:  ENVVVLDMLQLKKSREDHRLKYVVAKNVVVSYMLQPKMSSSQICCS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAGCCAAAAAGATCTTCGTCTCAAGTATATTGTAGCCGAGAATGTCGTCATCTCAAATATGTTGCAGTCGAGAAAGTCATTGTCTCATATATGTTGCAGCCGAG
GATGTCGTCATCTCAAATATGTTGCCGTCGAGAAGGTTATCCCCTCAAATATGTTGCAGCTGAGAAGATCATCGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCT
CAAATATATTACAACCAAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAACAGATCTTCGTCTTAAGTATATTCTAGTCGAGAATGTCGTCGTCTTAGATATGTTGCAA
CTGAAAAAGTCCAGGGAAGATCATCGTCTCAAATATGTTGTAGCTAAGAATGTCGTCGTCTCATATATGTTGCAACCGAAAATGTCATCGTCTCAAATATGTTGCAGTCG
AGAAGGTCGTCGTCTCAAATATGTTGTAATTGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTACAGCCAAAAAGATCTTCGTCTCAAGTATATTGTAGCCGAGAATGTCGTCATCTCAAATATGTTGCAGTCGAGAAAGTCATTGTCTCATATATGTTGCAGCCGAG
GATGTCGTCATCTCAAATATGTTGCCGTCGAGAAGGTTATCCCCTCAAATATGTTGCAGCTGAGAAGATCATCGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCT
CAAATATATTACAACCAAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAACAGATCTTCGTCTTAAGTATATTCTAGTCGAGAATGTCGTCGTCTTAGATATGTTGCAA
CTGAAAAAGTCCAGGGAAGATCATCGTCTCAAATATGTTGTAGCTAAGAATGTCGTCGTCTCATATATGTTGCAACCGAAAATGTCATCGTCTCAAATATGTTGCAGTCG
AGAAGGTCGTCGTCTCAAATATGTTGTAATTGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGATGA
Protein sequenceShow/hide protein sequence
MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQ
LKKSREDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRRLKYVVIENVVVSNMLQPR