CuGenDBv2

Gene ID	IVF0006554
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic
Genome location	chr01:28955620..28957493
RNA-Seq Expression	IVF0006554
Synteny	IVF0006554
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR003425 - CCB3/YggT

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0067975.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 [Cucumis melo var. makuwa]

7.15e-118

98.88

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Query:  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS
        +RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL+DASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS
Subjt:  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS

Query:  FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

TYK18148.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 [Cucumis melo var. makuwa]

1.76e-118

99.44

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Query:  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS
        +RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS
Subjt:  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS

Query:  FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

XP_004136017.2 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 [Cucumis sativus]

2.60e-120

95.83

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Query:  MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKL
        MAATA CSSLSSIRRGFKYHPQRNPN KFQAIKCSSSLLGSFTSSK L SLAYVIPPLKPAAAYEAARTIPF L+DASMAASDFVNSMTLADLDPGTAKL
Subjt:  MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKL

Query:  AISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        AISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Subjt:  AISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

XP_008451549.1 PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucumis melo]

1.84e-127

99.48

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Query:  MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKL
        MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL+DASMAASDFVNSMTLADLDPGTAKL
Subjt:  MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKL

Query:  AISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        AISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  AISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

XP_031745003.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Cucumis sativus]

3.01e-117

94.82

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Query:  MAATAACSSLSSIRR-GFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAK
        MAATA CSSLSSIR  GFKYHPQRNPN KFQAIKCSSSLLGSFTSSK L SLAYVIPPLKPAAAYEAARTIPF L+DASMAASDFVNSMTLADLDPGTAK
Subjt:  MAATAACSSLSSIRR-GFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAK

Query:  LAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        LAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Subjt:  LAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9A7 Uncharacterized protein

3.0e-89

87.2

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Query:  MAATAACSSLSSIR-------------------RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAA
        MAAT ACSSLSSIR                   RGFKYHPQRNPN KFQAIKCSSSLLGSFTSSK L SLAYVIPPLKPAAAYEAARTIPF L+DASMAA
Subjt:  MAATAACSSLSSIR-------------------RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAA

Query:  SDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQ
        SDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQ
Subjt:  SDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQ

Query:  GLLVLLSQQVS
        GLLVLLSQQVS
Subjt:  GLLVLLSQQVS

A0A1S3BSI7 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic

4.5e-98

99.48

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Query:  MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKL
        MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL+DASMAASDFVNSMTLADLDPGTAKL
Subjt:  MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKL

Query:  AISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        AISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  AISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

A0A5A7VQJ0 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3

5.4e-91

98.88

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Query:  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS
        +RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL+DASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS
Subjt:  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS

Query:  FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

A0A5D3D3A7 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3

1.8e-91

99.44

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Query:  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS
        +RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS
Subjt:  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFS

Query:  FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  FLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

A0A6J1CUU2 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3

1.5e-80

83.42

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Query:  MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGS-FTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAK
        MAA A CSSL+SIRRGFK+HPQRNPNY+FQA++CSSSLLGS  TSSK+   LA   PPLKPAAA+E  RT PFAL+DASMAASDF  +M LADLDP TAK
Subjt:  MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGS-FTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAK

Query:  LAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        LAI FLGP LS FSFLFI RIVMSWYPKLPVGKFPYV+AYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  LAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

SwissProt top hits

e value

%identity

Alignment

Q8RWM7 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic

2.4e-43

72.22

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Query:  EAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPV
        E A T    +R  + + S+ + +++LADLDPGTAKLAI  LGP+LS F FLFI RIVMSWYPKLPV KFPYV+AYAPTEP+L+ TRKVIPPL GVDVTPV
Subjt:  EAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPV

Query:  VWFGLVSFLNEILLGPQGLLVLLSQQ
        VWFGLVSFL+EIL+GPQGLLVL+SQQ
Subjt:  VWFGLVSFLNEILLGPQGLLVLLSQQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G07430.1 YGGT family protein

1.3e-04

25.64

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Query:  SSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDA---SMAASDFVNSMTLADLDPGTAKLAISFLGPS----LSVFSFLFIARIVMSWYPK
        SS+L GS  S   L +LA  +  +       A +T    + D    S++ +  V   +L D  PG     ++ +       L ++S + + R+++SW+P 
Subjt:  SSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDA---SMAASDFVNSMTLADLDPGTAKLAISFLGPS----LSVFSFLFIARIVMSWYPK

Query:  LPVGKFPYVIAYAPTEPLLIATRKVIPPL-GGVDVTPVVWFGLVSFLNEILLGPQG
        +P  + P        +P L   R +IPP+   +DV+P++ F ++  L  I+ G  G
Subjt:  LPVGKFPYVIAYAPTEPLLIATRKVIPPL-GGVDVTPVVWFGLVSFLNEILLGPQG

AT5G36120.1 cofactor assembly, complex C (B6F)

1.7e-44

72.22

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Query:  EAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPV
        E A T    +R  + + S+ + +++LADLDPGTAKLAI  LGP+LS F FLFI RIVMSWYPKLPV KFPYV+AYAPTEP+L+ TRKVIPPL GVDVTPV
Subjt:  EAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPV

Query:  VWFGLVSFLNEILLGPQGLLVLLSQQ
        VWFGLVSFL+EIL+GPQGLLVL+SQQ
Subjt:  VWFGLVSFLNEILLGPQGLLVLLSQQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCGCCACCGCTGCCTGCTCCTCTCTCAGCTCCATTCGAAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTACAAATTCCAAGCAATCAAATGTAGCTCATC
TTTGTTGGGTTCTTTTACCTCTTCCAAGATTCTTCCGTCACTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTGCCT
TGCGAGATGCATCAATGGCTGCCTCTGATTTTGTGAACAGTATGACCTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCG
GTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCCAGTGGGGAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTAAT
TGCAACAAGGAAGGTGATCCCTCCTCTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGC
TTGTCCTCCTTTCTCAACAAGTCAGCTAA

mRNA sequence

Show/hide mRNA sequence

AAAGGCCTCAAACGCAATTTTTCCCATTGATGATAAAGGGATAGCCTTCTCATTCTTCCTCCAGCGGAGCTCCTCTGTGAAACCCATGGCCGCCACCGCTGCCTGCTCCT
CTCTCAGCTCCATTCGAAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTACAAATTCCAAGCAATCAAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCC
AAGATTCTTCCGTCACTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTGCCTTGCGAGATGCATCAATGGCTGCCTC
TGATTTTGTGAACAGTATGACCTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTA
GAATAGTAATGTCTTGGTATCCCAAGTTGCCAGTGGGGAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTAATTGCAACAAGGAAGGTGATCCCTCCT
CTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGCTTGTCCTCCTTTCTCAACAAGTCAG
CTAAATCTTGATGAGAATGCTTCAGAGAAACATTCTTTCGTTTTTTAGTTCTGTATATGCAACTGATCTTCTTAGCTGAGCCTCTTTGGTTCCAAAAGGCAAAGGATGTG
AGAACTTGAAATTCTTAATGAAAGAAAATTTTCCTCATCCTAGAGAGTGTAATCAGTTCAGCTTCAGATTGGTTTTGAGCTAAAACTGACTTGACCTTGTGTCGTTTTGA
GAAGATTGAACGTTGTTTGAAAATTTGATCTTTCAAGTTCCGAGCTAATCAAACTTTAATTTCTAGATAAAAATGTTGATTGAGGTCACATTGCC

Protein sequence

Show/hide protein sequence

MAATAACSSLSSIRRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALRDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLS
VFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

IVF0006554 (gene) of Melon (IVF77) v1 genome