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IVF0006558 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006558
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Genome locationtig00000084_ERROPOS800000:620222..620506
RNA-Seq ExpressionIVF0006558
SyntenyIVF0006558
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038025.1 Enzymatic polyprotein [Cucumis melo var. makuwa]3.34e-2266.67Show/hide
Query:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNV
        +KDWFKANIHLQD+TR+EDEAFLLTKN +MS+L+    Q+EFNSVVN V V +S+ +D   E  SPASVNNV
Subjt:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNV

KAA0038028.1 polyprotein [Cucumis melo var. makuwa]3.41e-2265.28Show/hide
Query:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNV
        +KDWFKANIHLQD+TR+EDEAFLLTKN +MS+L+    Q+EFNSVVN V V +S+ +D  +E  SPAS+NNV
Subjt:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNV

KAA0060292.1 hypothetical protein E6C27_scaffold22G00670 [Cucumis melo var. makuwa]9.28e-2572.46Show/hide
Query:  LTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFS
        +TR+EDEA LLTKN +MSSL   G QEEFN VVNTVAVQIS+PDD QAE NSP S+NNVIE++D+DDF+
Subjt:  LTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFS

KAA0066200.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]9.27e-2363.29Show/hide
Query:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDS-QAEVNSPASVNNVIEDEDD
        MKDWFKANIHLQD+TR+E+EAFLLTKN +MS+L  T  Q+EFN+VVN V V +S+ DD  QAE +SPASVN+ + + D+
Subjt:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDS-QAEVNSPASVNNVIEDEDD

TYK19825.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.32e-57100Show/hide
Query:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFSIHTPITTSMIHF
        MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFSIHTPITTSMIHF
Subjt:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFSIHTPITTSMIHF

TrEMBL top hitse value%identityAlignment
A0A5A7T5B0 Polyprotein5.6e-1761.73Show/hide
Query:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDF
        +KDWFKANIHLQD+TR+EDEAFLLTKN +MS+L+    Q+EFNSVVN V V +S+ +D  +E  SPAS+NNV +D D D +
Subjt:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDF

A0A5A7T975 Enzymatic polyprotein7.3e-1762.96Show/hide
Query:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDF
        +KDWFKANIHLQD+TR+EDEAFLLTKN +MS+L+    Q+EFNSVVN V V +S+ +D   E  SPASVNNV +D D D +
Subjt:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDF

A0A5A7UWR6 Uncharacterized protein3.3e-1772.46Show/hide
Query:  LTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFS
        +TR+EDEA LLTKN +MSSL   G QEEFN VVNTVAVQIS+PDD QAE NSP S+NNVIE++D+DDF+
Subjt:  LTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFS

A0A5A7VGC4 Retrotransposable element Tf28.7e-1863.29Show/hide
Query:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDS-QAEVNSPASVNNVIEDEDD
        MKDWFKANIHLQD+TR+E+EAFLLTKN +MS+L  T  Q+EFN+VVN V V +S+ DD  QAE +SPASVN+ + + D+
Subjt:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDS-QAEVNSPASVNNVIEDEDD

A0A5D3D8C1 Retrotransposable element Tf22.7e-43100Show/hide
Query:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFSIHTPITTSMIHF
        MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFSIHTPITTSMIHF
Subjt:  MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFSIHTPITTSMIHF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGATTGGTTCAAAGCCAATATTCACCTTCAAGACCTGACCCGCCGAGAAGACGAAGCTTTCCTTCTCACAAAGAATGTTATCATGTCATCCCTAATAAGAACAGG
ATTTCAAGAAGAGTTTAACTCCGTGGTCAACACAGTCGCTGTTCAGATCTCTAATCCAGATGACTCACAAGCAGAAGTAAATTCTCCAGCCTCCGTTAATAATGTCATAG
AAGATGAAGATGATGACGACTTCTCGATCCATACGCCAATTACTACATCAATGATCCATTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGATTGGTTCAAAGCCAATATTCACCTTCAAGACCTGACCCGCCGAGAAGACGAAGCTTTCCTTCTCACAAAGAATGTTATCATGTCATCCCTAATAAGAACAGG
ATTTCAAGAAGAGTTTAACTCCGTGGTCAACACAGTCGCTGTTCAGATCTCTAATCCAGATGACTCACAAGCAGAAGTAAATTCTCCAGCCTCCGTTAATAATGTCATAG
AAGATGAAGATGATGACGACTTCTCGATCCATACGCCAATTACTACATCAATGATCCATTTTTAG
Protein sequenceShow/hide protein sequence
MKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFSIHTPITTSMIHF