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IVF0006562 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006562
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationchr01:15467371..15467523
RNA-Seq ExpressionIVF0006562
SyntenyIVF0006562
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049713.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]6.53e-1397.44Show/hide
Query:  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
        +AELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
Subjt:  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
KAE8646925.1 hypothetical protein Csa_020940, partial [Cucumis sativus]1.57e-0657.45Show/hide
Query:  MDENGGITGLEVAELNKAVMVGDLQEKVNETVVVE--DLEEKTNETM
        M+ENGG+ GLEV +LN+A++  +L+EKVN+TVVV   DLEE  NE +
Subjt:  MDENGGITGLEVAELNKAVMVGDLQEKVNETVVVE--DLEEKTNETM
TYK12162.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]7.19e-1397.44Show/hide
Query:  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
        +AELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
Subjt:  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
TrEMBL top hitse value%identityAlignment
A0A5A7U1H8 Ty1-copia retrotransposon protein4.6e-1097.44Show/hide
Query:  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
        +AELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
Subjt:  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
A0A5D3CLH6 Ty1-copia retrotransposon protein4.6e-1097.44Show/hide
Query:  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
        +AELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
Subjt:  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAAAATGGAGGCATCACTGGTTTGGAAGTTGCCGAACTGAACAAAGCGGTAATGGTTGGGGATTTGCAAGAGAAGGTGAATGAAACGGTGGTGGTGGAGGATTT
GGAAGAGAAGACAAACGAAACGATGGTGGTCGAGGATTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAAAATGGAGGCATCACTGGTTTGGAAGTTGCCGAACTGAACAAAGCGGTAATGGTTGGGGATTTGCAAGAGAAGGTGAATGAAACGGTGGTGGTGGAGGATTT
GGAAGAGAAGACAAACGAAACGATGGTGGTCGAGGATTTTTAA
Protein sequenceShow/hide protein sequence
MDENGGITGLEVAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF