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IVF0006578 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006578
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:12242553..12243118
RNA-Seq ExpressionIVF0006578
SyntenyIVF0006578
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033263.1 retrotransposon protein [Cucumis melo var. makuwa]5.30e-4351.85Show/hide
Query:  MAEKMPERNIQAST-IDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAG
        MAEK+P   ++A+T IDC+ KTLKR FQ IAEM GP C+GF WN E KCI+ EKEL DNW      GLLNKSFP+YD+L Y+FG+DRA    A+TF + G
Subjt:  MAEKMPERNIQAST-IDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAG

Query:  LNV-FEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR
         N    GY+ F   D N+ +   +YSQ + +S DD+  +R   +S+GR  SS SKRK+E++R
Subjt:  LNV-FEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR

KAA0037854.1 retrotransposon protein [Cucumis melo var. makuwa]6.70e-4552.23Show/hide
Query:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA
        M  K+P  N+ AS ID + K LKRMF  +AEM GP C GF WN E KCI+ EKE+ D+W        GLLNK FPHYD+L Y+FGKDR +    +TFTN 
Subjt:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA

Query:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRK
        G N   GYE F  D  +D +  +MYSQ L MS D++M TR+   S+GR  SS SKRK
Subjt:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRK

KAA0037928.1 retrotransposon protein [Cucumis melo var. makuwa]2.03e-108100Show/hide
Query:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGY
        MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGY
Subjt:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGY

Query:  EGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR
        EGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR
Subjt:  EGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR

KAA0054347.1 retrotransposon protein [Cucumis melo var. makuwa]2.68e-4453.5Show/hide
Query:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA
        MA K+P  N+ ASTID + K LKRMF  IAEM GP C+GF WN E KCI+ EKE+ DNW        GLL K F HYD+L Y+FGKDRA    A++F + 
Subjt:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA

Query:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRK
        G N   GYE F  +   D     MYSQ L MSPD++MGTR+   S+GR  SS SKRK
Subjt:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRK

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]5.75e-4453.16Show/hide
Query:  MAEKMPERNIQAST-IDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTN
        M  K+P  N+ A+T IDC+ KTLKR +Q+IAEM GP C GF WN ++KCI+ EKEL DNW        GLLNK FP+YD+L Y+FGKDRA+  HA+TF +
Subjt:  MAEKMPERNIQAST-IDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTN

Query:  AGLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRK
         G NV  G+E F   D NDME   M S R  MS DDI   R    +D R +SS SKR+
Subjt:  AGLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRK

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein1.3e-3450.63Show/hide
Query:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA
        MA K+P  N+ ASTID + K LKRMF  I EM GP C+GF WN E KCI+ EKE+ D+W        GLLNKSFPHYD+L Y+F KD A    A++F + 
Subjt:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA

Query:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ
        G N   GY+ F  +  +D +   MYS+ L MSPD++MGTR+   S+GR  SS SK+K+
Subjt:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ

A0A5A7U098 Retrotransposon protein1.3e-3453.8Show/hide
Query:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA
        MA K+P  NI ASTID + K +KRMF  +AEM GP C+GF WN E KCI+VEKEL D+W        GLLNKSF HYD+L Y+FGKDRA    A++FT+ 
Subjt:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA

Query:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ
        G N   GY+ F  D   D     MYS  L MSPDD+M TR+   S+ R  SS SKRK+
Subjt:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ

A0A5A7UIE9 Retrotransposon protein8.8e-3653.16Show/hide
Query:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA
        MA K+P  N+ ASTID + K LKRMF  IAEM GP C+GF WN E KCI+ EKE+ DNW        GLL K F HYD+L Y+FGKDRA    A++F + 
Subjt:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA

Query:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ
        G N   GYE F  +   D     MYSQ L MSPD++MGTR+   S+GR  SS SKRK+
Subjt:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ

A0A5D3CHG6 Retrotransposon protein3.0e-3651.9Show/hide
Query:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA
        M  K+P  N+ AS ID + K LKRMF  +AEM GP C GF WN E KCI+ EKE+ D+W        GLLNK FPHYD+L Y+FGKDR +    +TFTN 
Subjt:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNA

Query:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ
        G N   GYE F  D  +D +  +MYSQ L MS D++M TR+   S+GR  SS SKRK+
Subjt:  GLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ

A0A5D3D647 Retrotransposon protein1.9e-83100Show/hide
Query:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGY
        MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGY
Subjt:  MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGY

Query:  EGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR
        EGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR
Subjt:  EGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTGTCAGACAAAGACCCTAAAGAGAATGTTCCAGGACATAGCAGAAATGTTCGGCCCGTTGTG
CAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGTAGAGAAGGAATTGTCCGACAATTGGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCT
ACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGAAGGGTACGAGGGATTTTTCACTGACGATAGAAATGAT
ATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGATCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAA
GAGGAAGCAGGAGGCCAAGCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTGTCAGACAAAGACCCTAAAGAGAATGTTCCAGGACATAGCAGAAATGTTCGGCCCGTTGTG
CAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGTAGAGAAGGAATTGTCCGACAATTGGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCT
ACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGAAGGGTACGAGGGATTTTTCACTGACGATAGAAATGAT
ATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGATCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAA
GAGGAAGCAGGAGGCCAAGCGATAG
Protein sequenceShow/hide protein sequence
MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRND
MEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR