CuGenDBv2

Gene ID	IVF0006621
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein SPA, chloroplastic
Genome location	chr04:3652624..3654550
RNA-Seq Expression	IVF0006621
Synteny	IVF0006621
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003756 - protein disulfide isomerase activity (molecular function)
InterPro domains	IPR035272 - Protein of unknown function DUF5351 IPR036410 - Heat shock protein DnaJ, cysteine-rich domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136388.1 protein disulfide-isomerase LQY1, chloroplastic [Cucumis sativus]

2.57e-110

98.09

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPT STSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVA+GIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGD+KEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_008466492.1 PREDICTED: protein SPA, chloroplastic [Cucumis melo]

1.09e-111

100

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_022142253.1 protein SPA, chloroplastic [Momordica charantia]

2.28e-104

94.27

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MT APSLSRLHSPFLY PLKPTS+ SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQ+
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGDEKEVSRCINC+GVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_022936404.1 protein SPA, chloroplastic [Cucurbita moschata]

1.67e-106

95.54

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPTSS SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGL S+AVGIGIPVFYETQIDNAAKRENTQPCFPC+GSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_038899789.1 protein SPA, chloroplastic [Benincasa hispida]

1.01e-107

96.82

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPS+SRLHSPFLYCPLKPTSSTSLSVTFS NQRSP +YPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGDEKEVSRCINCDG GTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJ55 Uncharacterized protein

1.4e-84

98.09

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPT STSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVA+GIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGD+KEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A1S3CRE4 protein SPA, chloroplastic

1.2e-85

100

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A6J1CMU6 protein SPA, chloroplastic

4.6e-80

94.27

Show/hide

Query:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MT APSLSRLHSPFLY PLKPTS+ SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQ+
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGDEKEVSRCINC+GVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A6J1F877 protein SPA, chloroplastic

1.1e-81

95.54

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPTSS SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGL S+AVGIGIPVFYETQIDNAAKRENTQPCFPC+GSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A6J1IFD3 protein SPA, chloroplastic

1.1e-81

95.54

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPTSS SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGL S+AVGIGIPVFYETQIDNAAKRENTQPCFPC+GSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

SwissProt top hits

e value

%identity

Alignment

K4BVL1 Protein SPA, chloroplastic

9.8e-64

74.84

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Query:  MTVAPSLSRLHSPFLYCPLK-PT-SSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGA
        M  APSLSR  SPF+  PLK PT SS+  +  F    R   SYP I+A+DLDQNTV+A++VG++SVA+G+GIPVFYETQIDNAAKRENTQPCFPC+G+GA
Subjt:  MTVAPSLSRLHSPFLYCPLK-PT-SSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGA

Query:  QRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        Q+CRFCMGTG+VTVELGG E EVSRCINCDG G LTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  QRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

Q8GSJ6 Protein disulfide-isomerase LQY1, chloroplastic

5.4e-62

75.64

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Query:  APSLSRLHSPFLYCPLKPTSSTSLSVTFSG-NQRSP-PSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRC
        APS  RLHSPF++CP+  T S     +FS  N RSP  SYPRI+A +LD NTVVA+SVG+ SVA+GIGIPVFYETQIDNAAKRENTQPCFPC+G+GAQ+C
Subjt:  APSLSRLHSPFLYCPLKPTSSTSLSVTFSG-NQRSP-PSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRC

Query:  RFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        R C+G+GNVTVELGG EKEVS CINCDG G+LTCTTCQGSG+QPRYLDRREFKDDD
Subjt:  RFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

Arabidopsis top hits

e value

%identity

Alignment

AT1G75690.1 DnaJ/Hsp40 cysteine-rich domain superfamily protein

3.8e-63

75.64

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Query:  APSLSRLHSPFLYCPLKPTSSTSLSVTFSG-NQRSP-PSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRC
        APS  RLHSPF++CP+  T S     +FS  N RSP  SYPRI+A +LD NTVVA+SVG+ SVA+GIGIPVFYETQIDNAAKRENTQPCFPC+G+GAQ+C
Subjt:  APSLSRLHSPFLYCPLKPTSSTSLSVTFSG-NQRSP-PSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRC

Query:  RFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        R C+G+GNVTVELGG EKEVS CINCDG G+LTCTTCQGSG+QPRYLDRREFKDDD
Subjt:  RFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

AT4G13670.1 plastid transcriptionally active 5

6.9e-04

29.7

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Query:  RAIDLDQNTVVALSVGL---VSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGNVTVELGGDE--KEVSRCINCDGVGTLTCTTCQ
        R +D+ QN V  L        S  +G   PV      D +        C  C G G   C  C GTG   +E    E   E ++C  C+G+G   C  C 
Subjt:  RAIDLDQNTVVALSVGL---VSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGNVTVELGGDE--KEVSRCINCDGVGTLTCTTCQ

Query:  G
        G
Subjt:  G

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACAGTAGCACCTTCGCTTTCCCGCCTCCATTCTCCATTTCTGTATTGTCCTCTCAAGCCAACTTCATCTACCTCTTTATCAGTCACATTCTCTGGAAATCAACGATC
GCCACCATCATATCCACGCATCAGAGCAATAGATCTTGACCAAAACACGGTGGTGGCACTTTCAGTTGGGCTGGTGAGTGTTGCAGTTGGAATAGGTATTCCCGTCTTCT
ACGAAACCCAAATTGATAATGCTGCAAAGCGTGAAAATACTCAGCCCTGCTTTCCCTGTAGTGGTTCAGGAGCACAGAGATGCAGATTTTGCATGGGAACTGGCAATGTG
ACTGTAGAACTTGGTGGAGATGAAAAAGAAGTCTCCCGGTGTATTAACTGTGACGGTGTTGGCACATTGACATGTACTACATGTCAGGGCTCTGGAATTCAACCTCGATA
CCTAGACCGCAGAGAATTTAAAGATGATGATTGA

mRNA sequence

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CTGATGATGATGACGACAGGCAGTTGGATGAGTGGTGGGTCTGTAGTAGAGCAGAGGCAGCCAGTAACGGATATCCAAAATCCTGGAATGCGTGGTGAAGCTTTGTAGCT
TTGAAACAAACCACAGCTTCAAGTGTTTTCTTTAGGAATTGGGACTGAGACTGACTTTCTTTTTCTTTCTGATTCGGAGCTCTCACAAGCAAAGGAATCGAGTCCAAGGA
ATTCAGAAATGACAGTAGCACCTTCGCTTTCCCGCCTCCATTCTCCATTTCTGTATTGTCCTCTCAAGCCAACTTCATCTACCTCTTTATCAGTCACATTCTCTGGAAAT
CAACGATCGCCACCATCATATCCACGCATCAGAGCAATAGATCTTGACCAAAACACGGTGGTGGCACTTTCAGTTGGGCTGGTGAGTGTTGCAGTTGGAATAGGTATTCC
CGTCTTCTACGAAACCCAAATTGATAATGCTGCAAAGCGTGAAAATACTCAGCCCTGCTTTCCCTGTAGTGGTTCAGGAGCACAGAGATGCAGATTTTGCATGGGAACTG
GCAATGTGACTGTAGAACTTGGTGGAGATGAAAAAGAAGTCTCCCGGTGTATTAACTGTGACGGTGTTGGCACATTGACATGTACTACATGTCAGGGCTCTGGAATTCAA
CCTCGATACCTAGACCGCAGAGAATTTAAAGATGATGATTGAAGCCCTGCAGAACCAAACCCGGCAACATCACCGATTCCGATTTTGTGTTTAATTTGATGGCTTGAAAT
TGGCTTGAACCTTGTTAGTTCCATTGAATCGAAGAGCTTGGTAACTTCTACCTAGCAATTCTTTTTGGTAACTTGCATTCTTCTAATGTATATCTGTGGTTAATAATACA
AACAACATTGTAAAAGGAGAGAAGAATTAACTGTACTATCCCGAGATTATGAATTCATCTCTATTCACTGTCAGTGAAATCAGAAATGGGGGATCAAACGCAATCTGATA
ATCAAAAGCACTTCTTTTTGGTACTTTTTCCGTGCATTCTTCTAATGTCTAAGAATATATATGGCTAATAATACAAACAAAATTGTAAGAGGAGAGAAGAATTTAAC

Protein sequence

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MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGNV
TVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

IVF0006621 (gene) of Melon (IVF77) v1 genome