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IVF0006632 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006632
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr01:10167785..10168051
RNA-Seq ExpressionIVF0006632
SyntenyIVF0006632
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]9.28e-3470.11Show/hide
Query:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLI
        MCD SDV +GAMLGQ  DKVI PIY  +KTLNEAQENYTT E + L + FAI+KY SYIVGSKVTIH+DH  IR+LM KKDA  +LI
Subjt:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLI

KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]4.38e-3471.59Show/hide
Query:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR
        MCD SDV VG M GQ  DKV  PIYY  KTLNEA+ENYTTIE + L I FAI+K++SYIVGSKVTIH+DHS IR+LMAKKDA   LIR
Subjt:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR

TYK26567.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]9.32e-3471.59Show/hide
Query:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR
        MCD SDV VG M GQ  DKV  PIYY  KTLNEA+ENYTTIE + L I FAI+K++SYIVGSKVTIH+DHS IR+LMAKKDA   LIR
Subjt:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR

WP_165881909.1 Ty3/Gypsy family RNase HI domain-containing protein, partial [Bacillus amyloliquefaciens]2.56e-2959.09Show/hide
Query:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR
        MCD SD A+GA+LGQ  DK+ + IYY++KTLNEAQ NYTT E + L I FA  K++SY++G+K  +HTDHS I++LM KKD   RLIR
Subjt:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR

WP_217833163.1 Ty3/Gypsy family RNase HI domain-containing protein, partial [Synechococcus sp. PCC 7002]1.38e-2959.09Show/hide
Query:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR
        MCD S+  VGA+LGQ  +K++ PIYY +KTLN  QENYTT E + L I FA+ K+++Y +GSKVTI++DHS I++LM KKDA  RLIR
Subjt:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR

TrEMBL top hitse value%identityAlignment
A0A1S4BYQ6 uncharacterized protein LOC1078132411.4e-2257.95Show/hide
Query:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR
        MCD SDVAVGA+LGQ I+K+  P+YY +KT+NEAQ NYT  E + L I FA++K++ Y++G+KV IHTDH+ +R+LM KKD+  RL+R
Subjt:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR

A0A251U088 Reverse transcriptase2.4e-2262.5Show/hide
Query:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR
        MCD SD AVGA+LGQ +DK   PIYY +KTLN+AQENYTT E + L + FA  K++SY+V SK T+ TDHS +RFL  KKDA  RLIR
Subjt:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR

A0A5A7V586 Retrovirus-related Pol polyprotein from transposon 17.64.0e-2571.59Show/hide
Query:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR
        MCD SDV VG M GQ  DKV  PIYY  KTLNEA+ENYTTIE + L I FAI+K++SYIVGSKVTIH+DHS IR+LMAKKDA   LIR
Subjt:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR

A0A5A7V8R9 RT_RNaseH domain-containing protein8.9e-2570.11Show/hide
Query:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLI
        MCD SDV +GAMLGQ  DKVI PIY  +KTLNEAQENYTT E + L + FAI+KY SYIVGSKVTIH+DH  IR+LM KKDA  +LI
Subjt:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLI

A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.64.0e-2571.59Show/hide
Query:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR
        MCD SDV VG M GQ  DKV  PIYY  KTLNEA+ENYTTIE + L I FAI+K++SYIVGSKVTIH+DHS IR+LMAKKDA   LIR
Subjt:  MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.3e-0939.53Show/hide
Query:  DVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR
        D SDVA+GA+L Q+      P+ Y ++TLNE + NY+TIE + L I +A K ++ Y++G    I +DH  + +L   KD   +L R
Subjt:  DVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR

P10394 Retrovirus-related Pol polyprotein from transposon 4123.4e-0530.23Show/hide
Query:  DVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR
        D S  A GA+L QN +    P+ Y ++   + + N +T E +   I +AI  ++ YI G   T+ TDH  + +L +  +   +L R
Subjt:  DVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.3e-0832.18Show/hide
Query:  DVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGS-KVTIHTDHSTIRFLMAKKDAMLRLIR
        D S+ A+GA+L Q+     +PI Y +++LN+ +ENY TIE + L I +++   ++Y+ G+  + ++TDH  + F +  ++   +L R
Subjt:  DVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGS-KVTIHTDHSTIRFLMAKKDAMLRLIR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCGACGTTAGTGATGTTGCGGTAGGGGCTATGCTAGGTCAAAATATAGATAAGGTGATCCAACCGATATACTACACCAACAAGACCTTGAATGAGGCTCAAGAAAA
TTATACAACTATAGAAAATAAATTTCTTGTCATATTCTTTGCAATAAAAAAGTATAAGAGCTATATTGTTGGTTCCAAAGTCACGATACATACCGATCATTCTACAATCA
GATTTTTGATGGCAAAGAAGGACGCCATGCTGCGATTGATTAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCGACGTTAGTGATGTTGCGGTAGGGGCTATGCTAGGTCAAAATATAGATAAGGTGATCCAACCGATATACTACACCAACAAGACCTTGAATGAGGCTCAAGAAAA
TTATACAACTATAGAAAATAAATTTCTTGTCATATTCTTTGCAATAAAAAAGTATAAGAGCTATATTGTTGGTTCCAAAGTCACGATACATACCGATCATTCTACAATCA
GATTTTTGATGGCAAAGAAGGACGCCATGCTGCGATTGATTAGATAG
Protein sequenceShow/hide protein sequence
MCDVSDVAVGAMLGQNIDKVIQPIYYTNKTLNEAQENYTTIENKFLVIFFAIKKYKSYIVGSKVTIHTDHSTIRFLMAKKDAMLRLIR