; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0006637 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0006637
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr09:4534861..4535034
RNA-Seq ExpressionIVF0006637
SyntenyIVF0006637
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025278.1 retrotransposon protein [Cucumis melo var. makuwa]7.76e-1268.18Show/hide
Query:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
        M+TS+RAP+HVWTKEEEGT VECL+DLVSM  GN   + S QV+
Subjt:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
KAA0035633.1 retrotransposon protein [Cucumis melo var. makuwa]2.40e-1170.45Show/hide
Query:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
        M TSSRAP HVWTK+EE TLVECLVDLV M  GN TMV S +++
Subjt:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
KAA0037606.1 retrotransposon protein [Cucumis melo var. makuwa]2.22e-16100Show/hide
Query:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM
        MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM
Subjt:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM
KAA0062979.1 retrotransposon protein [Cucumis melo var. makuwa]3.05e-1170.45Show/hide
Query:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
        M+TS+ AP+HVWTKEEEGTLVECL++LVSM   N+ MV SGQV+
Subjt:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
TYK04240.1 retrotransposon protein [Cucumis melo var. makuwa]4.39e-1170.45Show/hide
Query:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
        M+TS+RA +HVWTKEEEGTLVECL++LV MR GN+ MV  GQV+
Subjt:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
TrEMBL top hitse value%identityAlignment
A0A5A7T630 Retrotransposon protein9.6e-12100Show/hide
Query:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM
        MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM
Subjt:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM
A0A5A7TCF2 Retrotransposon protein1.1e-0781.82Show/hide
Query:  FVILSMTTSSRAPKHVWTKEEE-GTLVECLVDLVSMRAG-NQTM
        F+ILSMTTSSRA KHVWTKEEE GTLVECL DLVSM  G NQ M
Subjt:  FVILSMTTSSRAPKHVWTKEEE-GTLVECLVDLVSMRAG-NQTM
A0A5A7V026 Retrotransposon protein8.4e-0888.24Show/hide
Query:  SSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM
        SSRAPKHVWTKEE+GTLVEC VDLVSMR GN+TM
Subjt:  SSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM
A0A5D3BYQ3 Retrotransposon protein3.8e-0870.45Show/hide
Query:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
        M+TS+RA +HVWTKEEEGTLVECL++LV MR GN+ MV  GQV+
Subjt:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
A0A5D3CAP9 Retrotransposon protein8.4e-0868.18Show/hide
Query:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
        M+TS+RAP+HVWTKEEEGT VECL+DLVSM  GN   + S QV+
Subjt:  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTATGAATTCTTTGTCCTTTGTCATTCTCAGCATGACAACATCATCACGTGCCCCAAAGCATGTATGGACGAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTT
AGTGGATCTGGTGTCTATGAGGGCTGGAAATCAAACAATGGTATGTTCCGGCCAAGTTTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTATGAATTCTTTGTCCTTTGTCATTCTCAGCATGACAACATCATCACGTGCCCCAAAGCATGTATGGACGAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTT
AGTGGATCTGGTGTCTATGAGGGCTGGAAATCAAACAATGGTATGTTCCGGCCAAGTTTCCTAG
Protein sequenceShow/hide protein sequence
MSSMNSLSFVILSMTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS