CuGenDBv2

Gene ID	IVF0006641
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein FAR1-RELATED SEQUENCE 4
Genome location	chr06:3428689..3429191
RNA-Seq Expression	IVF0006641
Synteny	IVF0006641
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037812.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]

1.31e-57

80.91

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Query:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
        MST+RSI  EIVHK R NLG+NISYQKAWR KEHMVKILHGDTVESYALIPR FDK VESNP      EMDDSGHFKFCFMAFGA IEGWKYC+PII VD
Subjt:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD

Query:  GTLFKCKFGG
        G   KCKFGG
Subjt:  GTLFKCKFGG

KAA0041797.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa]

3.51e-61

84.55

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Query:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
        MS DRSI KEIVHKTR NLGVNISYQKAWR KEHMVKILHGDTVESYALIPR FDK VESNP      E+DD GHFKFCFMAFGA IEGWKYCRPIISVD
Subjt:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD

Query:  GTLFKCKFGG
        GT  KCKFGG
Subjt:  GTLFKCKFGG

TYJ95626.1 uncharacterized protein E5676_scaffold104G00450 [Cucumis melo var. makuwa]

1.67e-57

82.73

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Query:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
        MS D SI KEIVHK R NLGVNISY+KAWR KEHMVKILHGDTVESYALIPR FDK V+SNP      EMDDSGHFKFCFMAFGA IEGWKYCRPIISVD
Subjt:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD

Query:  GTLFKCKFGG
        GT  KCKFGG
Subjt:  GTLFKCKFGG

TYJ99762.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]

4.87e-65

94.29

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Query:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
        MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP      EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
Subjt:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD

Query:  GTLFK
        GTLFK
Subjt:  GTLFK

TYK02872.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]

1.32e-58

80.91

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Query:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
        MST+RSI  EIVHK R NLG+NISYQKAWR KEHMVKILHGDTVESYALIPR FDK VESNP      EMDDSGHFKFCFMAFGA IEGWKYC+PII VD
Subjt:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD

Query:  GTLFKCKFGG
        G   KCKFGG
Subjt:  GTLFKCKFGG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2W2 Protein FAR1-RELATED SEQUENCE 4

7.2e-45

80.91

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Query:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
        MST+RSI  EIVHK R NLG+NISYQKAWR KEHMVKILHGDTVESYALIPR FDK VESNP      EMDDSGHFKFCFMAFGA IEGWKYC+PII VD
Subjt:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD

Query:  GTLFKCKFGG
        G   KCKFGG
Subjt:  GTLFKCKFGG

A0A5A7TJB7 Protein FAR1-RELATED SEQUENCE 2-like

7.7e-47

84.55

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Query:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
        MS DRSI KEIVHKTR NLGVNISYQKAWR KEHMVKILHGDTVESYALIPR FDK VESNP      E+DD GHFKFCFMAFGA IEGWKYCRPIISVD
Subjt:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD

Query:  GTLFKCKFGG
        GT  KCKFGG
Subjt:  GTLFKCKFGG

A0A5D3B9S0 Uncharacterized protein

1.4e-45

82.73

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Query:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
        MS D SI KEIVHK R NLGVNISY+KAWR KEHMVKILHGDTVESYALIPR FDK V+SNP      EMDDSGHFKFCFMAFGA IEGWKYCRPIISVD
Subjt:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD

Query:  GTLFKCKFGG
        GT  KCKFGG
Subjt:  GTLFKCKFGG

A0A5D3BJ31 Protein FAR1-RELATED SEQUENCE 4

1.3e-49

94.29

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Query:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
        MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP      EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
Subjt:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD

Query:  GTLFK
        GTLFK
Subjt:  GTLFK

A0A5D3BZ76 Protein FAR-RED IMPAIRED RESPONSE 1-like

5.5e-45

82.73

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Query:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD
        MSTDRSI KEIVHK   NLGVNISYQKAWR KEHMVKILH D VESYALIPR FDK VESNP      EMDDSGHFKFCFMAFGA IEGWKYCR IISVD
Subjt:  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNP------EMDDSGHFKFCFMAFGALIEGWKYCRPIISVD

Query:  GTLFKCKFGG
        GT  KCKFGG
Subjt:  GTLFKCKFGG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49920.1 MuDR family transposase

2.1e-04

31.4

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Query:  KEHMVKILHGDTVESYALIPRLFDKFVESNPEMDD-----------SGHFKFCFMAFGALIEGWKYCRPIISVDGTLFKCKFGGSY
        K   +K   GD  +S+ LIP+L      SN  + D              F+  F AF   I+G+++CRP+I VD        GG Y
Subjt:  KEHMVKILHGDTVESYALIPRLFDKFVESNPEMDD-----------SGHFKFCFMAFGALIEGWKYCRPIISVDGTLFKCKFGGSY

AT1G64255.1 MuDR family transposase

3.2e-05

28.72

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Query:  LGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNPEMDD--------SGHFKFC--FMAFGALIEGWKYCRPIISVDGTLFKCKF
        +G  +        KE  +K + GD  +S+   P+L      SN  + D             FC  F AF   IEG+++CRP+I VD     C++
Subjt:  LGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNPEMDD--------SGHFKFC--FMAFGALIEGWKYCRPIISVDGTLFKCKF

AT1G64260.1 MuDR family transposase

2.5e-05

29.41

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Query:  GVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNPEM----------DDSGHFKFCFMAFGALIEGWKYCRPIISVD
        G  +   K    K  ++K + GD  +S+ ++P+L   F  SN  +           D   F+  F +F   IEG+++CRP+I VD
Subjt:  GVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNPEM----------DDSGHFKFCFMAFGALIEGWKYCRPIISVD

Sequences

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CDS sequence

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ATGTCTACTGATCGTTCCATTGCTAAAGAGATTGTGCATAAGACTCGTATAAATCTTGGAGTTAATATAAGTTACCAAAAAGCTTGGAGGACAAAAGAACATATGGTAAA
GATATTACACGGTGATACAGTTGAATCGTATGCATTGATTCCAAGACTCTTTGATAAATTTGTTGAATCTAACCCAGAAATGGATGATAGTGGTCATTTCAAGTTTTGTT
TTATGGCTTTTGGTGCATTAATTGAGGGGTGGAAATACTGTAGACCTATTATTTCTGTTGATGGGACATTGTTTAAGTGTAAGTTTGGTGGATCCTATTAA

mRNA sequence

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Protein sequence

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MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVESNPEMDDSGHFKFCFMAFGALIEGWKYCRPIISVDGTLFKCKFGGSY

IVF0006641 (gene) of Melon (IVF77) v1 genome